Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00274 ATGGACAAAGTCCATTCCCACAGGCAGGTAGCTGTTATCAAACACTCGCTCTTCGATCAGGGATATTTGGATGAGCAGTTTATCCAACTGGAAGAATTGCAGGACGATGCTAATCCTAACTTTGTTGAGGAAATTGTTACTCTTTACTACCGTGATTCTTCTAGGCTTATCTCAAACTTGGACCACACACTGGAAAGGAACCCTCTGGATTTCAACAAGCTGGACACAATTATGCACCAGTTTAAAGGAAGCAGCTCAAGCATCGGAGCTAAAAAGGTGAAAGCAGAATGCACTCTGTTTAGGGAATATTGCAGGACAAGAAATGGAGAAGGATGCAGGAGGAGCTTCCAACAAATGAAGAAAGAATATGCTATACTGAGAAAGAAGCTTGAAACATATTTTCAGATGGCAAGGCAAGCTGGGCCCAAAGAGACAGCATTTCGGCCCAAGTAA 453 0.4305 MDKVHSHRQVAVIKHSLFDQGYLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISNLDHTLERNPLDFNKLDTIMHQFKGSSSSIGAKKVKAECTLFREYCRTRNGEGCRRSFQQMKKEYAILRKKLETYFQMARQAGPKETAFRPK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00274 150 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 133 IPR008207 GO:0000160
Vimu4g00274 150 Pfam Hpt domain 44 126 IPR008207 GO:0000160
Vimu4g00274 150 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 6 139 IPR036641 GO:0000160
Vimu4g00274 150 FunFam Histidine-containing phosphotransfer protein 4 1 145 - -
Vimu4g00274 150 Gene3D HPT domain 1 146 IPR036641 GO:0000160
Vimu4g00274 150 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 7 143 IPR045871 GO:0000160|GO:0009927|GO:0043424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00274 Vimu-Chr4 1903009 1904066 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00274 K14490 - gmx:100800310 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02888 11 48748869 48750507 Vimu4g00274 4 1903009 1904066 ECH
Vimu4g00274 4 1903009 1904066 Vimu4g00274 4 1903009 1904066 ECH
Vimu4g00274 4 1903009 1904066 Vimu10g02698 10 38400289 38403263 ECH
Vimu4g00274 4 1903009 1904066 Vimu11g02888 11 48748869 48750507 PCT