Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02888 ATGGACAGAAACCAATCCCGCAGGCAGATTGCTGCAATGAAACAGTCCCTCTTTGATCAGGGGTTACTGGATGAACAGTTTATCCAACTGGAGGAATTGCAGGATGATGCAAATCCCAACTTCGTTGAGGAAATCGTCACTCTTCACTATCGTGATTCATCACGGCTAATCTCAAGCATAGAGCAAGCTCTAAAAGAGAGGAACCCTCTGGATTTCAACAAGCTGGACACTCTTATGCATCAGTTCAAAGGAAGCAGCTCAAGCATAGGAGCCAAAAAGGTGAAAGCAGAGTGCAATCTGTTTAGGGAATATTGCAGAGCAGGAAATGCAGAAGGATGCATGAGGAGCTTCCAGCAGTTGAAGAAAGAATATGCTGCACTTAGAAAGAAACTTGAAGCTTATTTCCAGTTGGCAAGGCAAGCTGGACCCCAGGAAACAGCATGTCGCTCCAAATAA 456 0.4496 MDRNQSRRQIAAMKQSLFDQGLLDEQFIQLEELQDDANPNFVEEIVTLHYRDSSRLISSIEQALKERNPLDFNKLDTLMHQFKGSSSSIGAKKVKAECNLFREYCRAGNAEGCMRSFQQLKKEYAALRKKLEAYFQLARQAGPQETACRSK 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02888 151 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 6 140 IPR036641 GO:0000160
Vimu11g02888 151 Coils Coil 110 137 - -
Vimu11g02888 151 Pfam Hpt domain 50 128 IPR008207 GO:0000160
Vimu11g02888 151 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 134 IPR008207 GO:0000160
Vimu11g02888 151 FunFam Histidine-containing phosphotransfer protein 4 1 146 - -
Vimu11g02888 151 Gene3D HPT domain 1 147 IPR036641 GO:0000160
Vimu11g02888 151 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 6 144 IPR045871 GO:0000160|GO:0009927|GO:0043424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02888 Vimu-Chr11 48748869 48750507 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02888 K14490 - gmx:100798055 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02888 11 48748869 48750507 Vimu4g00274 4 1903009 1904066 ECH
Vimu11g02888 11 48748869 48750507 Vimu11g02888 11 48748869 48750507 ECH
Vimu11g02888 11 48748869 48750507 Vimu10g02698 10 38400289 38403263 ECH
Vimu4g00274 4 1903009 1904066 Vimu11g02888 11 48748869 48750507 PCT