Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03019 ATGTGGCCATTCGGCAGGAAAGGGGCTTCTGGGTTTTCATCATCATCCACTGCTCAGCAAGTCACTGAAGGTCTTGATGGAACTGGTCTCACTGCCATTGTTACAGGAGCATCCAGTGGTATTGGCACTGAGACTACACGTGTACTTGCTTTGCGAGGTGTCCACGTGATCATGGGTGTGAGAAATATGGTTGCTGCTAAAGATGTCAAAGAAACAATACTCAAGGAGATTCCCTCTGCAAAAGTTGATGCCTTGGAATTAGATCTCAGTTCACTGGATTCTGTCAAAAAATTTGCATCAGATTTTAAGTCTTCTGGTCTTCCCTTGAACATCTTGATGACAAGGGTAATATTGTTTTCTGGTTTGTTTAGAAACAACGCAGGAATTATGGCATGCCCTTTCAAGCTCTCTGCAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGGTCACTTTCTATTGACAAATCTTTTGTTGGACACTATGAAGAAAACTTCACGTGAAACTAAGAAAGAAGGAAGAATTGTTAATGTCTCTTCTGAGGCTCACCGGTTTGCATATTCTGAAGGAATCCGTTTTGACAAAATTAATGATAAGTCAAGGTACAGTGCCTGGGGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCGAATGAACTTTCAAGGCGTCTCAAGGAAGATGGGGTGGAGATTTCTGCAAATTCTCTTCATCCTGGAGCAATTACCACCAATCTTTTCCGTCATACTCCAATAAACGGTATAATTAATGTTATTGGTAGACTCGTTTTTAAAAACATCCCGCAGGGAGCAGCAACAACATGCTATGTAGCATTACACCCACAAGTGAAGGGAGTTAGTGGCAAGTATTTTTCAGACAGTAATGTGGCCCAAACAACCTCACTTGGGACTGATGCTGATTTGGCCAAGAAACTTTGGGATTTCAGCTTGAATTTGACCAAGTAA 972 0.4167 MWPFGRKGASGFSSSSTAQQVTEGLDGTGLTAIVTGASSGIGTETTRVLALRGVHVIMGVRNMVAAKDVKETILKEIPSAKVDALELDLSSLDSVKKFASDFKSSGLPLNILMTRVILFSGLFRNNAGIMACPFKLSADKIELQFATNHIGHFLLTNLLLDTMKKTSRETKKEGRIVNVSSEAHRFAYSEGIRFDKINDKSRYSAWGAYGQSKLANILHANELSRRLKEDGVEISANSLHPGAITTNLFRHTPINGIINVIGRLVFKNIPQGAATTCYVALHPQVKGVSGKYFSDSNVAQTTSLGTDADLAKKLWDFSLNLTK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03019 323 CDD retinol-DH_like_SDR_c_like 29 315 - -
Vimu3g03019 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 299 IPR036291 -
Vimu3g03019 323 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Vimu3g03019 323 PRINTS Glucose/ribitol dehydrogenase family signature 232 249 IPR002347 -
Vimu3g03019 323 PRINTS Glucose/ribitol dehydrogenase family signature 168 184 IPR002347 -
Vimu3g03019 323 Pfam short chain dehydrogenase 31 188 IPR002347 -
Vimu3g03019 323 PANTHER RETINOL DEHYDROGENASE 10 322 - -
Vimu3g03019 323 Gene3D - 20 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03019 Vimu-Chr3 44132395 44136628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03019 33 194 Acyl Lipid Metabolism Gene Families AT1G62610 28.902 7.13e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03019 - - gmx:100796920 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03019 3 44132395 44136628 Vimu3g03019 3 44132395 44136628 ECH
Vimu8g02129 8 27618959 27625564 Vimu3g03019 3 44132395 44136628 PCT
Vimu3g03019 3 44132395 44136628 Vimu8g02127 8 27585703 27591812 PCT