Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03015 GCAATAATGGCATTGGCTCCTGTTCCAAAAGTGGTATTTGGTTTAATTGCATTTGCAATCTTCTGGGTCTTGGCAGTTTTTCCAGCTGTGCCTTTTCTACCTATTGGGAGAACTGCAGGGTCCCTCCTTGGAGCCATGCTTATGGTCCTATTCCAAGTTATTACTCCAGATGATGCTTATGCCACGATTGATCTTCCAATTCTTGGTCTTCTCTTTGGGACAATGGTTGTCAGTGTCTATCTTGAAAGAGCTGACATGTTTAAGTATATAGGGAAGTTGCTGGCTTGGAAGAGTAGAGGTGCAAAGGACTTACTTTGTAGGATATGTGTTATCTCTGCTGTCTCAAGTGCTCTTTTCACAAATGACACCTCTTGTGTGGTTTTGACTGAATTCATATTAAAAATTGCTAGGCAGCATAACCTTCCACCAACACCCTTTCTACTTGCCCTGGCTTCGAGTGCTAATATTGGGTCTTCAGCAACTCCAATTGGCAACCCCCAAAACCTGGTTATAGCTGTTCAGAGTAAAATATCATTTGGTAATTTTCTGGTTGGTATTCTTCCAGCTATGGTGGCAGGAGTTGTAGCAAATGCTACAATTCTTCTAATCATGTATTGGAAGTTATTGTCCGTTCATAAGGACGAAGAAGATGCAGGGGCAGAAGCTGTGGTAGAGGAGTATGATTCTCATCGGTTTTCTCCTGCCACTATGTCTCATTTTTCATCCTTGAATTCTCAAGAATGGAATTCCCATCTTGAAGCTATCAGTGTTCAGAACTCTCCTCAACAGATTCTAAGAAACCGATCAATTGCAAGTGAAATTATTGGGGTTTCTAGTAACACTTTTGATTCTGCAAGAATATCAAGTTTACCAAGGGATGGAACAAATGGTGTGCCATCTCTGACAAAGGAGGAAACTAGTCCTACAAGTTCTTCAGCAACAGTGGATACACTTATTAACCCTTCGGAAAGAAAAAACAATCTTATCATAAGATGGAAAAGGGTACTGTGGAAATCTTGTGTTTACATCATCACAGTTGGAATGTTGGTTGCTTTACTTCTAGGTTTAAATATGTCATGGACTGCAATTACTGCGGCGCTTGCCCTTATCGTTCTTGATTTCAAAGATGCCAGGCCATGTTTAGAAAAGGTTTCGTATTCACTTTTGATATTCTTTTGTGGAATGTTTATCACGGTAGATGGCCTCAACAAAACTGGGATTCCAAGTGCTTTGTGGGACATAATGGAGCCCTATTCTCGCGTTGATCGAGCTAGTGGAGTTGCAATTCTTGCAGTTGTCATACTTGTATTATCAAATTTGGCTTCAAATGTGCCGACAGTTCTGTTGCTTGGAGGACGTGTAGCAGCCTCAGCTGCTGCAATTTCCAAAGCAGATGAGAAGAAGGCATGGCTGATATTGGCTTGGGCCAGCACCATATCAGGGAATCTCTCTTTGTTGGGATCAGCTGCTAACTTGATAGTGTGTGAACAGGCTATCCGTGCTCCAAACCTACCATACACGTTAACCTTCTGGAGTCACCTGAAATTTGGCATTCCTTCCACGATCATAGTCACAGCTATAGGTTTGACATTCATAAGATGA 1602 0.4176 AIMALAPVPKVVFGLIAFAIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVLFQVITPDDAYATIDLPILGLLFGTMVVSVYLERADMFKYIGKLLAWKSRGAKDLLCRICVISAVSSALFTNDTSCVVLTEFILKIARQHNLPPTPFLLALASSANIGSSATPIGNPQNLVIAVQSKISFGNFLVGILPAMVAGVVANATILLIMYWKLLSVHKDEEDAGAEAVVEEYDSHRFSPATMSHFSSLNSQEWNSHLEAISVQNSPQQILRNRSIASEIIGVSSNTFDSARISSLPRDGTNGVPSLTKEETSPTSSSATVDTLINPSERKNNLIIRWKRVLWKSCVYIITVGMLVALLLGLNMSWTAITAALALIVLDFKDARPCLEKVSYSLLIFFCGMFITVDGLNKTGIPSALWDIMEPYSRVDRASGVAILAVVILVLSNLASNVPTVLLLGGRVAASAAAISKADEKKAWLILAWASTISGNLSLLGSAANLIVCEQAIRAPNLPYTLTFWSHLKFGIPSTIIVTAIGLTFIR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03015 533 Pfam Citrate transporter 29 479 IPR004680 GO:0016020|GO:0055085
Vimu3g03015 533 CDD YbiR_permease 30 532 - -
Vimu3g03015 533 PANTHER TRANSPORTER ARSB-RELATED 3 531 - -
Vimu3g03015 533 MobiDBLite consensus disorder prediction 289 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03015 Vimu-Chr3 44107417 44110835 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03015 - - gmx:100781849 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02153 8 27871326 27873507 Vimu3g03015 3 44107417 44110835 ECH
Vimu3g03015 3 44107417 44110835 Vimu3g03015 3 44107417 44110835 ECH
Vimu8g02149 8 27836207 27838094 Vimu3g03015 3 44107417 44110835 PCT
Vimu3g03015 3 44107417 44110835 Vimu8g02153 8 27871326 27873507 PCT