Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02080 ATGTCCCACACACCACCGCAAGTCCTCGATTCCGAGGAGCAAACCCCCGCACCCGCCGCCACTGCCGCCCAAACCCCCGAATCCCATGCCGCCACGCTCCTCCACCTTTCTTTCAACCAAGATTCCGGCTGCTTCGCCGCGGCCACTGACCGCGGCTTCCGCATCTACAACTGCGACCCTTTCCGGGAGATCTTCCGCCGCGATTTCGGCCCCGGCGGTGGTGTTGGCCTCGTCCACATGCTCTTCCGCTGCAACATACTCGCCTTCGTCGGTGGCGGCGCCGACCCACGCTACCCTCCCAACAAGGTTATGATCTGGGACGACCACCAATCCCGCTGCATCGGCGAGCTATCTTTTCGCTCTGAGGTGAAGGGCGTCCGGCTCCGGCGCGACCGCATCGTGGTGGTCCTGGCGCACAAGATCTTTGTGTATAACTTCTCCGATCTCAAGGTGCTGCACCAAATTGAGACCATCGCTAACCCTAAGGGCCTCTGCGACCTCTCCCACGTTTCGGCCACCATGGTCCTAGTCTGCCCCGGGTTGCAGAAGGGGCAGGTTAGGGTTGAGCACTACGCCTCCAAGAGAACCAAGTTCATCATGGCGCACGATTCCCGAATTGCTTGTTTTTCTCTCACGCATGATGGCAGGTTGCTCGCCACCGCCAGCTCCAAGGGTACCCTCATTAGGCTCTTCAATACCCTCGACGTTTGCACTCAATATACAATAAAGGGTGTCAGGGTAAGGAGGGGTGCAGACCGAGCAGAGATATACAGCCTTGCATTCTCTCCTACTGCGCAGTGGCTTGCTGTTTCAAGTGACAAGGGGACCGTTCATGTTTTCAACCTGAAGGTTGATTCTGGACTGATGGGGCATGACAGATCGAACAGTACTTCTGAGGCTAATCCTGCTAACCCTACTGCTGTTTCATCTCTTTCATTTATTAAAGGTGTGCTACCTAAGTATTTTAGCTCGGAGTGGTCCGTGGCTCAATTTCGATTGCAAGAAGGTTTGCAATATATTGTGGCATTTGGCCATCAAAAGAATACAATTGTAATACTAGGCATGGATGGCAGGTATGTCAGTAGTGCATCATATTCGTGCTCTCTTAACTTCTACCGATGTCAGTTTGACTCCTCGAGCGGTGGAGAGATGACCCAACTTGAATATTATAATTTCCTAAAGGCAGAAGACACATTCTAG 1200 0.5358 MSHTPPQVLDSEEQTPAPAATAAQTPESHAATLLHLSFNQDSGCFAAATDRGFRIYNCDPFREIFRRDFGPGGGVGLVHMLFRCNILAFVGGGADPRYPPNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFSDLKVLHQIETIANPKGLCDLSHVSATMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFSLTHDGRLLATASSKGTLIRLFNTLDVCTQYTIKGVRVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLMGHDRSNSTSEANPANPTAVSSLSFIKGVLPKYFSSEWSVAQFRLQEGLQYIVAFGHQKNTIVILGMDGRYVSSASYSCSLNFYRCQFDSSSGGEMTQLEYYNFLKAEDTF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02080 399 Gene3D - 34 379 IPR015943 GO:0005515
Vimu3g02080 399 SUPERFAMILY WD40 repeat-like 27 283 IPR036322 GO:0005515
Vimu3g02080 399 SUPERFAMILY Tricorn protease domain 2 252 374 - -
Vimu3g02080 399 SMART WD40_4 241 281 IPR001680 GO:0005515
Vimu3g02080 399 SMART WD40_4 19 57 IPR001680 GO:0005515
Vimu3g02080 399 SMART WD40_4 192 232 IPR001680 GO:0005515
Vimu3g02080 399 Pfam WD domain, G-beta repeat 249 281 IPR001680 GO:0005515
Vimu3g02080 399 MobiDBLite consensus disorder prediction 1 23 - -
Vimu3g02080 399 FunFam Autophagy-related protein 18a isoform A 31 378 - -
Vimu3g02080 399 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 28 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02080 Vimu-Chr3 35683069 35685712 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02080 K22991 - gmx:100787427 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02080 3 35683069 35685712 Vimu3g02080 3 35683069 35685712 ECH
Vimu6g02153 6 18973334 18976562 Vimu3g02080 3 35683069 35685712 ECH
Vimu6g02842 6 25130338 25133480 Vimu3g02080 3 35683069 35685712 PCT