Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02153 ATGGCTACGCTTTCTGCAAGCGCTTCTCCTCCATGGCCAAATCCTGATCAAAACACCTCTCCCAGTTCAAATCCAAACCCTAATTTCCTTCCCGACCAGTCCCAAACACTCGACTTCGAATCCCTCATGCCTCCGCAACCGAAATCGCCACAACGCTACCACTCCCCCGCCGCATCGCCGCCGGGATTCTCCTCGGCGGCGCCCCCGACGGTGCTCCACGTCGCCTTCAACCAGGACCATGCTTGCTTCTCCGCCGCCACTGACAACGGTTTCCGCATCTACAATTGCAACCCCTTCAGCGAGCAATTCCGCCGCGAGTTTGACGGCGGAGGAATCGGTCACGTTGCGATGCTCTTCCGCTGCAACATCATCGCCCTTGTCGGCGGCGGACCCAATCCCCATTACCCGCCCAACAAGGTCATGGTCTGGGACGACCATCAGGGCTGCTGCATCGGTGATTTATCCCCCCGTGCCGCGGTTCGCAGCGTCCGGCTCCGCCGCGATCGGATTATCGTCGCTGTCGAGCAGAGGATTTTGGTCTTCAACTTCCTGGACCTCAATCTCTTGCACCAGATTGAGACCTATCCCAACCCTAAGGGTCTCTGCGCGGTTTCGCAACTGTCTGATTCGTTCGTTCTCGCATGCCCTGGGTTGCAGAAGGGTCAGATTCGCGTGGAGCACTATTCGCAAAAGAAGACAAAGTTCATATCAGCGCATGACTCCAGAATTACTTGTTTCGCTCTCACACTTGATGGGCAGTTAATTGCCACCGCCAGCTCCAAGGGCACGCTGATTCGAATTTTCGACACGGTTCAGGGCACACTTCTTCAGGAAGTGAGAAGGGGTGCAAATGTTGCTGAGATCTATAGTTTGGCATTCTCTTCTACTGCACGGTGGCTAGCAGTCTCAAGTGACAAGGGTACTGTCCATGTATTCAGCCTTAAGGTTAATTCTAGCATCTCCGAGGAAGAAAAGCCTCAAAATCCATCCAATTCAGATACTGCCATTACCCCTTCTAACTCATCTCGCTCCTTCATCAAATTTAAAGGAGTGTTACCCAAGTATTTCAATTCTGAGTGGTCGGTTGCTCAGTTTCGCTTACCAGAGGGCTCTCACTACATAGTTGCATTTGGTCACGAAAAGAATACAGTCATAATTCTTGGCATGGATGGAAGCTTCTATAAATGCCAATTTGATCCAGTACATGGAGGGGAGATGACTCAGCTGGAATATCATAACTTTTTAAAGCCAGCAACAGAAACAACCATGTGA 1272 0.5173 MATLSASASPPWPNPDQNTSPSSNPNPNFLPDQSQTLDFESLMPPQPKSPQRYHSPAASPPGFSSAAPPTVLHVAFNQDHACFSAATDNGFRIYNCNPFSEQFRREFDGGGIGHVAMLFRCNIIALVGGGPNPHYPPNKVMVWDDHQGCCIGDLSPRAAVRSVRLRRDRIIVAVEQRILVFNFLDLNLLHQIETYPNPKGLCAVSQLSDSFVLACPGLQKGQIRVEHYSQKKTKFISAHDSRITCFALTLDGQLIATASSKGTLIRIFDTVQGTLLQEVRRGANVAEIYSLAFSSTARWLAVSSDKGTVHVFSLKVNSSISEEEKPQNPSNSDTAITPSNSSRSFIKFKGVLPKYFNSEWSVAQFRLPEGSHYIVAFGHEKNTVIILGMDGSFYKCQFDPVHGGEMTQLEYHNFLKPATETTM 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02153 423 Gene3D - 53 395 IPR015943 GO:0005515
Vimu6g02153 423 MobiDBLite consensus disorder prediction 21 42 - -
Vimu6g02153 423 SUPERFAMILY WD40 repeat-like 67 327 IPR036322 GO:0005515
Vimu6g02153 423 MobiDBLite consensus disorder prediction 1 64 - -
Vimu6g02153 423 SMART WD40_4 229 269 IPR001680 GO:0005515
Vimu6g02153 423 SMART WD40_4 272 313 IPR001680 GO:0005515
Vimu6g02153 423 SMART WD40_4 53 95 IPR001680 GO:0005515
Vimu6g02153 423 FunFam Autophagy-related protein 18a isoform A 69 400 - -
Vimu6g02153 423 Pfam WD domain, G-beta repeat 286 312 IPR001680 GO:0005515
Vimu6g02153 423 Pfam WD domain, G-beta repeat 233 268 IPR001680 GO:0005515
Vimu6g02153 423 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 67 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02153 Vimu-Chr6 18973334 18976562 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02153 K22991 - gmx:100781692 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02153 6 18973334 18976562 Vimu6g02153 6 18973334 18976562 ECH
Vimu6g02153 6 18973334 18976562 Vimu3g02080 3 35683069 35685712 ECH