Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01998 ATGGTACCCTTCGGAGATCTATATAAAGAATTGCGCAACTCCCGACCAACACAACAACAAACCAAGATCTTCTTCCTTACAACTTCCAGTGTCTGTCTAAAAGAACCCTTCAAGCAAGTAAAACTACTCACTAAGACCATGGCTCCTGTCATGACCACCATGGAAGCCAACCTCACCAAAGGGAAAGCTAAAACCGCCGAAGGTGTTAACCGTGCCTACGTGACCTTCCTTGCCGGAAATGGTGACTATGTAAAAGGTGTGGTTGGGTTAGCTAAAGGTCTGAGGAAGGTGAAGAGCATGTACCCTCTGGTGGTAGCTGTGCTACCGGATGTTCCCGAAGAGCACCGCAACATTCTCATCTCCCAAGGCTGCATTGTTAGAGAGATTGAGCCCGTGTACCCTCCAGAAAACCAAACCCAGTTTGCTATGGCATATTATGTCATCAACTACTCCAAGCTAAGAATTTGGGAGTTTGTGGAATACTCTAAGATGATTTACCTAGACGGTGATATCCAAGTGTTCGACAACATCGACCACTTGTTCGACTTCCCTGATAACTACTTCTATGCGGTGATGGACTGTTTCTGTGAGGCCACCTGGGCCCACACTCCGCAATATGGGATCGGGTACTGCCAGCAGTGCCCCGACAAGGTTCAGTGGCCCACTAAACTTGGGCCGAAGCCTCCTCTCTATTTCAACGCTGGGATGTTTGTTTACCAGCCCAATCTGGCTACCTACAAGGACCTTCTTGAAACAGTCAAAATCACGAAGCCCACTTCCTTTGCTGAACAGGATTTTCTGAACATGTACTTCAAGGATAAGTATAGGCCAATTCCTAACGTGTACAATCTTGTGCTGGCCATGTTATGGCGTCACCCTGAGAATGTTGAGCTTGAAAAAGTTAAAGTGGTTCACTACTGTGCTGCGGGATCAAAGCCTTGGAGGTACAGTGGGAAAGAGGAGAATATGCAGAGAGAAGATATAAAGATGTTAGTGAAGAAGTGGTGGGATATATATGAGGATGAGACTTTGGATTATAACTATTCACTCAATGCAGAAAGGATCACTGAGGCGCTTTTGGAGGGTGGCGAACTCAATTACGTTCCAGCTCCATCTGCTGCTTAA 1125 0.4649 MVPFGDLYKELRNSRPTQQQTKIFFLTTSSVCLKEPFKQVKLLTKTMAPVMTTMEANLTKGKAKTAEGVNRAYVTFLAGNGDYVKGVVGLAKGLRKVKSMYPLVVAVLPDVPEEHRNILISQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDFPDNYFYAVMDCFCEATWAHTPQYGIGYCQQCPDKVQWPTKLGPKPPLYFNAGMFVYQPNLATYKDLLETVKITKPTSFAEQDFLNMYFKDKYRPIPNVYNLVLAMLWRHPENVELEKVKVVHYCAAGSKPWRYSGKEENMQREDIKMLVKKWWDIYEDETLDYNYSLNAERITEALLEGGELNYVPAPSAA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01998 374 CDD GT8_Glycogenin 71 341 - -
Vimu3g01998 374 Pfam Glycosyl transferase family 8 75 316 IPR002495 GO:0016757
Vimu3g01998 374 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 69 347 IPR029044 -
Vimu3g01998 374 SUPERFAMILY Nucleotide-diphospho-sugar transferases 73 343 IPR029044 -
Vimu3g01998 374 PANTHER GLYCOGENIN SUBFAMILY MEMBER 51 344 - -
Vimu3g01998 374 FunFam Hexosyltransferase 69 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01998 Vimu-Chr3 34857702 34859102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01998 47 374 Glycosyltransferase AT1G56600 75.148 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01998 K18819 - gmx:548050 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01998 3 34857702 34859102 Vimu3g01998 3 34857702 34859102 ECH
Vimu6g02029 6 18151130 18152725 Vimu3g01998 3 34857702 34859102 ECH
Vimu6g01935 6 17414742 17417246 Vimu3g01998 3 34857702 34859102 PCT