Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02029 ATGGCCCCTGAGCTTGTCTCCACCGTCACAAAATCCACTGCCTCCTTCACCAGTCCGACCACCCTGCCACCACGTGCTTATGTCACATTCCTTGCTGGAAATGGTGACTACGTAAAAGGGGTGGTTGGTCTTGCCAAAGGTTTGAGAAAGGTTAAAACAGTTTACCCGCTGGTGGTGGCGGTCCTTCCTGACGTACCAGAAGAGCACCGTAAGATCCTTAAATCTCAGGGCTGTATTGTCCGTGAGATTGAACCCGTTTACCCACCAGAAAATCAGACCCAGTTCGCTATGGCTTATTACGTCATCAACTATTCCAAGCTCCGTATATGGGAGTTTGTAGAATACAGTAAGATGATATACTTGGACGGAGACATTCAAGTATTTGAGAACATAGACCACTTATTTGACCTACCTGACGGTCACTTTTACGCTGTGATGGACTGCTTCTGCGAGAAGACATGGAGTCACACTCCTCAGTACAAGGTTGGGTATTGCCAGCAGTGTCCAGAAAAGGTGCAGTGGCCCACCGAATTGGGCCAGCCCCCTGCTCTTTATTTCAACGCCGGCATGTTCGTGTTTGAACCTAGCATGGTCACTTACCACGACTTATTGAAAAGGGTGAAAGTCACTACTCCCACATCGTTTGCAGAGCAGGACTTCTTGAACATGTACTTCAAGGACATTTATAAGCCAATTCCTCTGACCTACAACCTTGTTCTAGCCATGCTTTGGCGTCACCCAGAAAATGTTAACCTTGAGGAAGTCAAGGTTGTTCACTACTGTGCAGCGGGGTCGAAGCCTTGGAGATATACTGGAAAAGAAGAGAATATGCAAAGGGAGGATATAAAGATGCTGGTGCGTAAATGGTGGGATATCTACAACGATGCTTCTCTTGATTACAAGCCATTAGGAGCAAGTGAAGCTTCAGTAGATGGTGTTGACATGGAACCATTGGGACATCTATCAAAGGTTGTTCAACGTGTTCTTGCTGCACCTTCAGCAGCTTAG 1008 0.4692 MAPELVSTVTKSTASFTSPTTLPPRAYVTFLAGNGDYVKGVVGLAKGLRKVKTVYPLVVAVLPDVPEEHRKILKSQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGHFYAVMDCFCEKTWSHTPQYKVGYCQQCPEKVQWPTELGQPPALYFNAGMFVFEPSMVTYHDLLKRVKVTTPTSFAEQDFLNMYFKDIYKPIPLTYNLVLAMLWRHPENVNLEEVKVVHYCAAGSKPWRYTGKEENMQREDIKMLVRKWWDIYNDASLDYKPLGASEASVDGVDMEPLGHLSKVVQRVLAAPSAA 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02029 335 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 24 300 IPR029044 -
Vimu6g02029 335 PANTHER GLYCOGENIN SUBFAMILY MEMBER 22 296 - -
Vimu6g02029 335 Pfam Glycosyl transferase family 8 29 271 IPR002495 GO:0016757
Vimu6g02029 335 CDD GT8_Glycogenin 25 296 - -
Vimu6g02029 335 FunFam Hexosyltransferase 23 301 - -
Vimu6g02029 335 SUPERFAMILY Nucleotide-diphospho-sugar transferases 27 301 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02029 Vimu-Chr6 18151130 18152725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02029 1 301 Glycosyltransferase AT1G56600 79.139 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02029 K18819 - gmx:100809287 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02029 6 18151130 18152725 Vimu6g02029 6 18151130 18152725 ECH
Vimu6g02029 6 18151130 18152725 Vimu3g01998 3 34857702 34859102 ECH