Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01429 ATGGTTACTGTAATGGCAGACAATATGGGTTTATCTATTGGCAAGATTTTTTCTCGTTTGTGCGCCAAGAAGGAGATGCGAATTCTTATGGTTGGTCTTGATGCTGCCGGTAAAACCACAATATTGTATAAACTGAAGTTAGGGGAGATTGTCACCACAATTCCCACTATCGGATTTAACGTGGAGACTGTGGAGTATAAGAACATTAGCTTCACTGTGTGGGATGTTGGCGGTCAGGATAAGATTCGACCCTTGTGGAGACACTACTTCCAAAACACACAAGGGCTTATTTTTGTGGTAGACAGCAATGATCGTGATCGTGTTGTTGAGGCTAAAGATGAGTTGCATAGGATGCTGAACGAGGATGAATTAAGAGATGCTGTGTTGCTTGTTTTTGCAAACAAGCAAGATCTTCCTAATGCAATGAACGCTGCTGAAATCACTGATAGGCTTGGCCTAAACTCTCTGCGCCAGCGTCACTGGTACATCCAAAGTACATGTGCAACATCTGGTGAAGGTTTATACGAAGGACTAGACTGGCTTTCGAACAACATTTCAAGCAAGGCTTCCTTTAAATAG 579 0.4266 MVTVMADNMGLSIGKIFSRLCAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAKDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDRLGLNSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKASFK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01429 192 CDD Arf1_5_like 26 184 IPR045872 GO:0003924
Vimu2g01429 192 ProSiteProfiles small GTPase Arf family profile. 19 185 - -
Vimu2g01429 192 PRINTS GTP-binding SAR1 protein signature 27 50 IPR006689 GO:0003924|GO:0005525
Vimu2g01429 192 PRINTS GTP-binding SAR1 protein signature 82 107 IPR006689 GO:0003924|GO:0005525
Vimu2g01429 192 PRINTS GTP-binding SAR1 protein signature 55 79 IPR006689 GO:0003924|GO:0005525
Vimu2g01429 192 PRINTS GTP-binding SAR1 protein signature 127 148 IPR006689 GO:0003924|GO:0005525
Vimu2g01429 192 SMART sar_sub_1 9 185 IPR006689 GO:0003924|GO:0005525
Vimu2g01429 192 FunFam ADP-ribosylation factor 1 9 189 - -
Vimu2g01429 192 SMART rab_sub_5 26 159 - -
Vimu2g01429 192 Pfam ADP-ribosylation factor family 15 185 IPR006689 GO:0003924|GO:0005525
Vimu2g01429 192 PANTHER ADP RIBOSYLATION FACTOR-RELATED 15 184 IPR024156 GO:0005525
Vimu2g01429 192 SMART arf_sub_2 9 189 - -
Vimu2g01429 192 Gene3D - 15 191 IPR027417 -
Vimu2g01429 192 NCBIfam small GTP-binding protein domain 24 151 IPR005225 GO:0005525
Vimu2g01429 192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 186 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01429 Vimu-Chr2 9686679 9687971 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01429 K07937 - gmx:100789436 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01429 2 9686679 9687971 Vimu2g01429 2 9686679 9687971 ECH
Vimu2g01429 2 9686679 9687971 Vimu3g01878 3 33715037 33717537 ECH