Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01646 ATGGAATCAACTCATGTAATATCCATTACAAATGGTGAAGACAATGTTGCTCCAAGGAAGAATACTACTAAAACGTTTAAATTTTCACTTCCACCAGTTTTTTCCCTTCTTAGAGAAAACAAAATCCATCTCTTGGACAAGCAAATGAAAGACGCTAAAAAAATTATCCACAGCATCAAAGTTGGAATCTCCCTTGTTTTGATTTCACTTCTGTACCTCTTGGATCCTCTTTACGAGCAAGTTGGAGAAAATGCTATATGGGCTATCATGACTGTGGTCGTCACCTTCGAATTTTCCGCAGGAGCTACTCTAGGCAAAGGTTTAAATCGCGGAATGGGAACTATATTAGGAGGTGGACTGGGATGCATAGCAGCAGTTTTGGCTCAAAATATTGGTGGAGTTGGGAACTCTATTATAATTGGTGCTTCTTTTGTGTTTGATAAAAACAATGGTAAAAAGTTTCGGACAAATGCAGCTGCAATTGCAGTTGAAGAAACACTTCAAAATGCAAAAGTAAGAAAAATATTGGGGACAATTGCAACATATTTTCGACTATTCCCCAGCGTGAAGAAGAGATACGATTATGGAGTGATGATTCTTATTCTGACTTTTAGTTTGATTGTGGTGTCTGGTGTGCGCACTGAAGATCAGAAAGTTTGGGAAATAGCAGTTGAACGGCTTTTAACAATTGTTATGGGTTTCGTTGTGTGCATTTGTGTGAACTTGTTGATCTTCCCTTTGTGGGCCAGTGATGAACTCCATGATTCCATTCTCTCTAGATTCGAACACATTGCTGATTCATTACAAGGGTGCATGGAGGAATATGTCAAATTCGTTAGTCAAAAAGAAAGTAAAAAACCTGGTGCTAGCTTCAGTGTTTGCAAGTCGTTGTTGGACTCCAAATCAAAGGACGAGGTTCTGGTAAATTTTGCAAAATGGGAACCCTGGCATGGAAAATTTGGATTTTTCTATCCTTGGGAGAAGTACCTAAAGATTGGAGACGTTCTTCGAGAACTAGCTGCAATAGTTCTTTCTTTGGGAGGTTGCATCCAGGCCTCAGAAACGGCCATGAAAGTGGAACCGGTGAGTCAAAGTGTTGAAATGGAACCATGTGAGGCAATTGGGTCAGGAATTGTGTGGAGTCTGCGAGAACTTGGGAAGAGCATGAAGCAAATGAGCAAGTGTGAGGCTGACATATCAGAAAAGTTGAAGACAATGAGAGGAGAGATAAACTTGGTAATTTCCACGTCGAAAATGGCAGCAATTGATAACATGGATGCACTTGCAGTGGCGAGCTTCGTCTTCTTATTGAAGAAAGTTGTGGAGAAAGTAGAAGAACTTACCAAAGAGGTGGAGCAACTGGGAGACCTAGCTGCTTTTCCTGCTCATTCACTTTAG 1398 0.4056 MESTHVISITNGEDNVAPRKNTTKTFKFSLPPVFSLLRENKIHLLDKQMKDAKKIIHSIKVGISLVLISLLYLLDPLYEQVGENAIWAIMTVVVTFEFSAGATLGKGLNRGMGTILGGGLGCIAAVLAQNIGGVGNSIIIGASFVFDKNNGKKFRTNAAAIAVEETLQNAKVRKILGTIATYFRLFPSVKKRYDYGVMILILTFSLIVVSGVRTEDQKVWEIAVERLLTIVMGFVVCICVNLLIFPLWASDELHDSILSRFEHIADSLQGCMEEYVKFVSQKESKKPGASFSVCKSLLDSKSKDEVLVNFAKWEPWHGKFGFFYPWEKYLKIGDVLRELAAIVLSLGGCIQASETAMKVEPVSQSVEMEPCEAIGSGIVWSLRELGKSMKQMSKCEADISEKLKTMRGEINLVISTSKMAAIDNMDALAVASFVFLLKKVVEKVEELTKEVEQLGDLAAFPAHSL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01646 465 Coils Coil 437 457 - -
Vimu3g01646 465 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 49 460 - -
Vimu3g01646 465 Pfam Aluminium activated malate transporter 175 433 IPR020966 GO:0015743
Vimu3g01646 465 Pfam Aluminium activated malate transporter 50 143 IPR020966 GO:0015743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01646 Vimu-Chr3 30575525 30578797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01646 50 416 Miscellaneous Gene Families AT4G17970 36.141 1.45e-78 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01646 K25841 - gmx:100527892 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01646 3 30575525 30578797 Vimu3g01646 3 30575525 30578797 ECH
Vimu6g02839 6 25103633 25105860 Vimu3g01646 3 30575525 30578797 PCT
Vimu6g02256 6 19734569 19736739 Vimu3g01646 3 30575525 30578797 PCT