Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03141 ATGATGGGATCAGAAACAGAGAACAGAAAATGTCTACCTATTATAGATTTGAGTGATGAAAAGATGAAACCTGGTACTGAAACATGGGTTTCCACATCTGATGCTGTGAGGAGTGCCTTAGAGGATCACGGTGGATTCCTTGCACACTACAATAAGGTTGATCAAATGCTTACTGACTCTGTCTTCTCTGCAATGAAAGAACTCTTTGACCTTCCATTACAAACAAAAATGCAGCAGACAACTGATAAACCTATCTATAGCTACGCAGGACAACGCCCTGATATTCCTTTGTATGAATCCATGGCCATCGATAACCCATTGAATGCTAAAAATTGTCACAAGTATGCATCCATTATGTGGCCACAAGGGAACCACCAATTCAGTGAAAGTGTGAATAGCTATGCAAAGAAAGTTGCAGAACTGGATTATACTGTTAAGAGAATGGTGTTTGGGAGCTATGGATTGGAGAATGAGAAATGTGAGTGTTTGCTTGAATCAACGGATTATGTTATGAGATGCTACAAATATAGAACACCTAAGACAGGTGAGACCAACTTAGGAGTGCGTGCTCATACAGATTCTGGCTTCCTTACGATATTGAATCAGAGGTTAAATGGCTTAGAAGTTCAGTTGAAGAATGGAGAGTGGTTCCAGGTTGATGCCTCACCCTCCATCTTTGCTGTCTTGGCTGGCGATGCATTTATGGTATGGAGCAATGACAGAATACGTGGTTGTGTACACAGAGTATTCATGAATTCAAAGGTAGAGAGATTGAGTTTGGGCCTGCTTTCATATGCTGGAAAGGTGATGGAACCTGAGGAAAAATTAGTGGATAAAGAACACCCTCTTCGTTATAAACCATTTGACCATTATGGATATCTTCGTTTCTTCCTCACAGAAGAGGCTGTGAAAGCTGATTCTAGGATCAAGGCATACTGTGGTATTTGA 948 0.4082 MMGSETENRKCLPIIDLSDEKMKPGTETWVSTSDAVRSALEDHGGFLAHYNKVDQMLTDSVFSAMKELFDLPLQTKMQQTTDKPIYSYAGQRPDIPLYESMAIDNPLNAKNCHKYASIMWPQGNHQFSESVNSYAKKVAELDYTVKRMVFGSYGLENEKCECLLESTDYVMRCYKYRTPKTGETNLGVRAHTDSGFLTILNQRLNGLEVQLKNGEWFQVDASPSIFAVLAGDAFMVWSNDRIRGCVHRVFMNSKVERLSLGLLSYAGKVMEPEEKLVDKEHPLRYKPFDHYGYLRFFLTEEAVKADSRIKAYCGI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03141 315 Gene3D - 10 313 IPR027443 -
Vimu6g03141 315 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 293 - -
Vimu6g03141 315 FunFam Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 4 302 - -
Vimu6g03141 315 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 166 271 IPR005123 -
Vimu6g03141 315 Pfam 2OG-Fe(II) oxygenase superfamily 176 260 IPR044861 -
Vimu6g03141 315 SUPERFAMILY Clavaminate synthase-like 11 300 - -
Vimu6g03141 315 Pfam non-haem dioxygenase in morphine synthesis N-terminal 12 88 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03141 Vimu-Chr6 27736374 27738945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03141 134 286 Glycosyltransferase AT5G59530 26.875 1.09e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03141 - - gmx:100817683 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03141 6 27736374 27738945 Vimu3g00496 3 4782769 4784560 PCT