Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03139 ATGGGATCTGAGAGCGAAGTGAAGCTTCCAATTATTGACTTCTCCAGTGAGGACTTGGAATCCAATGTTGCAGAGTGGGAATCAGTGAAATCCAAAGTTCACAAAGCAGTCGTAGAATATGGTTGCTTTGAGGCTGTGTTTGATAAAGTCCCTTTGCATTTTCGAAAAGCCATATTTCTTGAAGTGGATGAGCTATTCAATCTTCCTTTAGAAACCAAGAAAAGAGCCGTTTCAAGTAAACCATATCGTGGTTATGTTGGTCCTATTCATCTCTATGAGAGCATCGGAATTGACGATGCCGATGTTCATGAGAAAGTCGAAACTTTTATCAACATCTTATGGCCACAAGGAAAACCAAGTTTTAGCAAAAATCTGCAACTCTTGTCTGAGAAAGTGGCAAGGTTGGATCAGATGATAAGGAAGATGTGTTTGGAGAGTTTAGGTGTTGAAAAGTATTTTGATGAGCAGATGAACTCAACATATTACCTTGCACGGCTTATCAAGTACAAAGCCCCTCAAACTGATAAACCAGAAATTGCCATATCAGAGCACACTGATAAGAACATATTGACCATATTATGTCAGAATCAAATTGATGGTTTGGAGATACAGACCAAAAGTGGAGAGTGGATCAAATTCAAGCCCTCAACGTCAAACAGTTTCGTTGTTGTCACTGGGGACACATTTTATGCATGGACTAATGGGAGAGTGCATACACCAATTCACAGAGTGATGATGACTGGAAATGAAAGAAGATTGACCATTGGATTGTTCACAGTTCCAAAACCAGGGTTCATAATAAAGGCCCCAGATGAGCTTGTGACAGAAGAGCACCCTTTGCTTTTCAAGCCCTTTGTCCAGAGTGAGTTCATGAAGTTTCTTCACTCTTCTGAGAACACAAAAAATGCTCTCAAGGTTTATTGTGGAGTTTGA 933 0.4009 MGSESEVKLPIIDFSSEDLESNVAEWESVKSKVHKAVVEYGCFEAVFDKVPLHFRKAIFLEVDELFNLPLETKKRAVSSKPYRGYVGPIHLYESIGIDDADVHEKVETFINILWPQGKPSFSKNLQLLSEKVARLDQMIRKMCLESLGVEKYFDEQMNSTYYLARLIKYKAPQTDKPEIAISEHTDKNILTILCQNQIDGLEIQTKSGEWIKFKPSTSNSFVVVTGDTFYAWTNGRVHTPIHRVMMTGNERRLTIGLFTVPKPGFIIKAPDELVTEEHPLLFKPFVQSEFMKFLHSSENTKNALKVYCGV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03139 310 SUPERFAMILY Clavaminate synthase-like 5 296 - -
Vimu6g03139 310 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 9 292 - -
Vimu6g03139 310 Gene3D - 1 300 IPR027443 -
Vimu6g03139 310 Pfam 2OG-Fe(II) oxygenase superfamily 168 259 IPR044861 -
Vimu6g03139 310 Pfam non-haem dioxygenase in morphine synthesis N-terminal 9 88 IPR026992 -
Vimu6g03139 310 FunFam Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 2 299 - -
Vimu6g03139 310 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 160 261 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03139 Vimu-Chr6 27729295 27730787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03139 3 290 Glycosyltransferase AT5G59530 24.590 4.73e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03139 - - gmx:100817152 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00494 3 4779035 4781140 Vimu6g03139 6 27729295 27730787 PCT