Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02844 ATGGCTTCAACCCAGCACCATGTTCAAGGCCTAACAGCTGAGGAAGAAACAGAACTAGAACCTGTGATAAAAAAATACCATCTTTTCGAACACTGTCCCAACAAATGTTCTTCCATAATATCGTACCGCATCGATGCTCCGGCGAGCACGGTTTGGCCGTTCGTGCGAAGCTTCGAGAGCCCTCAGAAGTACAAGCACTTCATCAAAGGGTGCAACATGAGAGGTGACGGCGGCGTCGGAAGCATAAGAGAAGTAACCGTTGTTTCTGGTCTTCCGGCGTCGACGAGCACCGAGAGACTCGAGATTTTGGACGATGACAAACACGTGCTGAGCTTTAGGGTGGTTGGTGGCGAGCACCGACTCAAGAACTACCGTTCCGTTACGTCGGTCAACGAGTTCAGGAAAGAGGGTAGGGTTTACACCATCGTATTGGAATCGTATATCGTAGACATACCCGAAGGGAATACGGAGGAAGATACGAAGATGTTTGTGGACACTGTGGTCAGACTCAACCTTCAAAAACTTGGGGTGGTGGCCATGGCTTCTTCTTCTTCATCCATGCATGAACAATAA 573 0.4904 MASTQHHVQGLTAEEETELEPVIKKYHLFEHCPNKCSSIISYRIDAPASTVWPFVRSFESPQKYKHFIKGCNMRGDGGVGSIREVTVVSGLPASTSTERLEILDDDKHVLSFRVVGGEHRLKNYRSVTSVNEFRKEGRVYTIVLESYIVDIPEGNTEEDTKMFVDTVVRLNLQKLGVVAMASSSSSMHEQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02844 190 Pfam Polyketide cyclase / dehydrase and lipid transport 43 175 IPR019587 -
Vimu1g02844 190 Gene3D - 1 190 IPR023393 -
Vimu1g02844 190 CDD PYR_PYL_RCAR_like 36 175 - -
Vimu1g02844 190 SUPERFAMILY Bet v1-like 36 176 - -
Vimu1g02844 190 PANTHER - 36 176 - -
Vimu1g02844 190 FunFam Abscisic acid receptor PYR1 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02844 Vimu-Chr1 40740864 40741902 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02844 K14496 - gmx:100778183 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00125 9 1482815 1485731 Vimu1g02844 1 40740864 40741902 ECH
Vimu1g02844 1 40740864 40741902 Vimu1g02844 1 40740864 40741902 ECH
Vimu1g02844 1 40740864 40741902 Vimu10g03158 10 42177766 42179031 PCT