Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02553 ATGGCTACTACTCTCTCTGAAGCCTATAGAGACTACCCTCTCCAACTCCATCATATTATCCCCTTAGACTTTTCTTCACTAAGGACCTTGCCTGAAACCCATGCATGGCCTCAATCTGAAGATGGTCATCATGATGATGATGGGAGTGGATCATGCATACCCATCATTGACCTCATGGATCCTAATGCCATGGAACTCATAGGCCTTGCTTGTGAGAAGTGGGGTGCCTTCCAATTGAAGAACCATGGCATACCCTTAAGTGTTGTTGAAGAGGTTGAAGAAGAAGCTAAGAGACTCTTTGCCCTCCCCGCCGACAGGAAATTGAAAGCCCTACGATCCGCCGCCGGGGCCACCGGCTACGGCCGGGCACGGATATCATCATTCTTCCCCAAGCACATGTGGCATGAAGGATTCACCATCATGGGCTCTCCATGCGATGATGCCAAAAAGATTTGGCCTAATGACCATACACGGTTTTGGTAA 483 0.4907 MATTLSEAYRDYPLQLHHIIPLDFSSLRTLPETHAWPQSEDGHHDDDGSGSCIPIIDLMDPNAMELIGLACEKWGAFQLKNHGIPLSVVEEVEEEAKRLFALPADRKLKALRSAAGATGYGRARISSFFPKHMWHEGFTIMGSPCDDAKKIWPNDHTRFW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02553 160 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 53 148 - -
Vimu1g02553 160 SUPERFAMILY Clavaminate synthase-like 17 159 - -
Vimu1g02553 160 Gene3D - 16 159 IPR027443 -
Vimu1g02553 160 Pfam non-haem dioxygenase in morphine synthesis N-terminal 53 153 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02553 Vimu-Chr1 36957376 36957858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02553 53 99 Glycosyltransferase AT5G59530 38.182 7.76e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02553 K04124 - gmx:100808546 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02553 1 36957376 36957858 Vimu10g02893 10 40077204 40078362 PCT
Vimu10g02895 10 40085127 40086275 Vimu1g02553 1 36957376 36957858 PCT