Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02893 ATGAACTTAACGAAAATGAATAATACTCTGAATGAAGTATACAAAGCACACCCTCTTACCCTTGGTGATATCATCCCCATAGATTTTTCTTCTTCCCCGAGTTTACCCGATTCCCACACGTGGTCTCAACCCATTGATGGTGATGATGATGATTTCTCATCGAACGATCCTGCATCATCATCCATACCCATCATAGACATGATGGATCCCAATGCCAAGAAACTCATAGCCATTGCATGCGAGAACTTTGGTGCCTTCCATTTGAAGAATCATGGCATACCCTTAGATGTTTCTCAGGGGGCTGAACAACAACTCCAACGCCTCTTCTCTCTCCCGACTCAACAAAAGATGAAGGCTCTCAGATCGCCCACCACTGCCACTGGATATGGCGTCGCAAGGATTTCACCTTTCTTCGACAAGTGCATGTGGCACGAAGGTTTCACCATCATCGGTTCTCCCTCTCACGATGCAAAAAAGTTATGGCCTCATGATTATCAACAATTCTGTGACACAATGGAGAAATATGAGAAGGAAATGAGGAGAATAGCGGATAGACTGACAGAAATGATGTTGGAGGTGTTGGAGATTTCGGAGGAAAAAAGGAAGTGGGTTGGTGGAAGCGATGTAAGTGCAGCTCTGCAGTTGAATTTCTACCCATGTTGTCCCGAACCGAACCGAGCCATGGGTTTGGGTCCTCACACAGACACTTCCATGTTCACAATTCTTCAAGCTAAATCGAGTGGTCTTCAACTCTTGAAGGAAGGAAAGTGGATCCCTGTGCATCCTCACCCGAACACTCTGATCGTTCACACAGGCGATTTTCTGCGCATCATGTCCAATGCACGCTTCTGCAGCCCAATTCATCGCGTAGTACCGAATGAGAAGGACGAACGTTACTCCATGGCTTATTTCTATTCTCCACCCACAGATTATACCGTGTCTCCGTCGGTAACCGGGGATCTTAACTCCGTCGCTCGTTTTCGTGATGTGACTGTGATGGAGTATATTGGGATCAAGGCTGAGAAATTTGGAGACTCCCTCTCTTCCATTAGCACTTGA 1059 0.4627 MNLTKMNNTLNEVYKAHPLTLGDIIPIDFSSSPSLPDSHTWSQPIDGDDDDFSSNDPASSSIPIIDMMDPNAKKLIAIACENFGAFHLKNHGIPLDVSQGAEQQLQRLFSLPTQQKMKALRSPTTATGYGVARISPFFDKCMWHEGFTIIGSPSHDAKKLWPHDYQQFCDTMEKYEKEMRRIADRLTEMMLEVLEISEEKRKWVGGSDVSAALQLNFYPCCPEPNRAMGLGPHTDTSMFTILQAKSSGLQLLKEGKWIPVHPHPNTLIVHTGDFLRIMSNARFCSPIHRVVPNEKDERYSMAYFYSPPTDYTVSPSVTGDLNSVARFRDVTVMEYIGIKAEKFGDSLSSIST 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02893 352 Coils Coil 165 192 - -
Vimu10g02893 352 SUPERFAMILY Clavaminate synthase-like 27 344 - -
Vimu10g02893 352 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 62 335 - -
Vimu10g02893 352 FunFam Gibberellin 3-beta-dioxygenase 1 23 338 - -
Vimu10g02893 352 Gene3D - 31 343 IPR027443 -
Vimu10g02893 352 MobiDBLite consensus disorder prediction 35 59 - -
Vimu10g02893 352 Pfam 2OG-Fe(II) oxygenase superfamily 213 307 IPR044861 -
Vimu10g02893 352 Pfam non-haem dioxygenase in morphine synthesis N-terminal 62 162 IPR026992 -
Vimu10g02893 352 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 208 307 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02893 Vimu-Chr10 40077204 40078362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02893 62 335 Glycosyltransferase AT5G59530 27.609 3.21e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02893 K04124 - gmx:100794325 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02553 1 36957376 36957858 Vimu10g02893 10 40077204 40078362 PCT