Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00358 ATGGTTGTCGACATAATGTCAAAGATAGTTGCGACTTTTTTCACTGCGCTTGGTGGTCCGCCGTTGGTTGTGGCACGTGGTGGCTTTTCAGGGATGCTTCCTGATTCCAGTAGTAGTGCCTATAATTTGGCAGTAATAACGTGTGGACCGGATTTAACAAAAGATGCAGTTGGGATTTGCCTACCAGACATTAACCTTTTAAATTCTACTTACATTGCTGTCATTTACCCTAATCAAACCGTAAGTTACTCGGTTAATGGAGTAGTCACCACTGGCTATTTTTCTCTGGATTACACTTTGAAAGAGCTAAGCAGTGTTCCCTTAACTCAGGGAGTATACTCTCGAACCAACAGGTTTGATGGCAATGTTTTTCCAATTCTTACTATCGATGATTTGCTTACATCGAAACAAAAACCAAAAGGAATATGGTTGAATATTCAGCACGATTCATTCTACACAAAGCACAATTTGAGTATGAGAAGCTTTGTGCTTTCAGCTTCTAAAAGAATAGTTTTCAGTCATATCTCATCACCCGAGGTTAATTTTCTGCGAGCTATATCATCAGGCGTCAACCCGAAGACAACAAAACTGGTCTTCCGGGTAATGGCAAAGAATGATGTAGAACCATCGACCAATCAGACCTATGAATCTCTTTTAACGAATCTTACATTTATCAAGACATTTGCTTCTGGAATTCTTGTTTCGAGGGAATACATATGGCCACTAGATGCAAGCCTTTATCTACAACCACATACATCTTTGGTCTCGGATGCACATAAAGCGGGGCTGGAAGTTTTTGGATCAGATTTTGTGAATGATGTTCCATCTAGCTTCAATTACAGTTATGATCCACTTACTGAGTACCTCCAGTTCATAGACAACGGTGACTTCTCTGTTGATGGTGTGCTGTCTGATTTCCCCATTACTGCATTTGAAGCAATAGATAAAGCTTTGATTATCTCAAAATATGGAGCAAGTGGGGATTATCCTGCTTGTACCAACTTATCATATATTAAGGCCATAGAGTATGGTGTGGATGTTCTTGACTGTCCGGTTCAAATATCAAAGGATGGAATACCATTTTGCTTAAACTCCATTGATCTTATAGAGAGTACGACAGTTGCCCAATCAAGCTTCAGCAAATTTGCCATGACTATCCCTCAGATCAAATCCACCAGTGGCATATTTGCATTCAACCTCACATGGAATGAGATAAAAGATTTGACCCCCTCAATATTGAATCCTTTTGCCAAATACAGATTGTTCAGGAATCCAAAATCTAAGAATTCTGGGCACTTGATGGCGTTATCAGATTTCTTGTCCTTGACAAAAAGTCACTCTTCTCTATCCGGTGTCTCTATCGCTGTTGAGAATGCAGATTATCTTTCTGAGAAGCAAGGATTAAATGTGATTGATGCAGTAATCAATGCTTTGAGCGAGGCAGGTTATGATAAGCCCGGATCCCAAAAGGTTTATATCCAATCCACTGATAGCTCTGTACTGCTAAAGTTCAAAGAGAAAACCAGTTATGAGCTTGTGTACAAGATTGACGAGACTGTCGGTGATGCTGATAATGCAGCTGTTGAGGATATAAAGAAATTTGCTAGTGCTGTGATTGTCAACAAGAACTCTGTATTTTCTAATAATGATGCATTCCTGACAAGCACTACGAAAACCGTGCCGAAGCTAAACGCTGCCAACCTCTCAGTTTTTGTAGAGACATTCAGCAATGAGTTTGTTTCTCAAGCGTGGGATTTCTTCTCAGATGCAACTGTTGAGATAAACTCTTATCTAAATGCTGATGGCCTAAAAATTGATGGTATCATCACAGACTTCCCTAAAACTGCCGACAGATACAGAAGTAAGTGCCATGCCAGCAATTTCTGCCGGAACAAATGCTTAAATTTGGGTGACAAGAGACCTACTTACATGGACCCTGTTGCACCAGGTGGTCTCTTTTCTCTCATTACCACAGATTTCTTGCCTCCAGCTCAAGCTCCACTCCCACCCTTGACAGAATCTGAAGTTGCAGTGCCACCTTTGCCTCCTGTTGCTAAAATAGCCCCAGTTTCCAGCCCCAGTTCTGGAACCCCAGCACCACAAGGAAATGCACAGCCTAAGGTTGCTGTCTGCTTCTTCTTTTCCTCTCTGGCTGTGTTCATAGCTTCCCTTCTTCTGCTTTGA 2184 0.413 MVVDIMSKIVATFFTALGGPPLVVARGGFSGMLPDSSSSAYNLAVITCGPDLTKDAVGICLPDINLLNSTYIAVIYPNQTVSYSVNGVVTTGYFSLDYTLKELSSVPLTQGVYSRTNRFDGNVFPILTIDDLLTSKQKPKGIWLNIQHDSFYTKHNLSMRSFVLSASKRIVFSHISSPEVNFLRAISSGVNPKTTKLVFRVMAKNDVEPSTNQTYESLLTNLTFIKTFASGILVSREYIWPLDASLYLQPHTSLVSDAHKAGLEVFGSDFVNDVPSSFNYSYDPLTEYLQFIDNGDFSVDGVLSDFPITAFEAIDKALIISKYGASGDYPACTNLSYIKAIEYGVDVLDCPVQISKDGIPFCLNSIDLIESTTVAQSSFSKFAMTIPQIKSTSGIFAFNLTWNEIKDLTPSILNPFAKYRLFRNPKSKNSGHLMALSDFLSLTKSHSSLSGVSIAVENADYLSEKQGLNVIDAVINALSEAGYDKPGSQKVYIQSTDSSVLLKFKEKTSYELVYKIDETVGDADNAAVEDIKKFASAVIVNKNSVFSNNDAFLTSTTKTVPKLNAANLSVFVETFSNEFVSQAWDFFSDATVEINSYLNADGLKIDGIITDFPKTADRYRSKCHASNFCRNKCLNLGDKRPTYMDPVAPGGLFSLITTDFLPPAQAPLPPLTESEVAVPPLPPVAKIAPVSSPSSGTPAPQGNAQPKVAVCFFFSSLAVFIASLLLL 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00358 727 Pfam Glycerophosphoryl diester phosphodiesterase family 324 615 IPR030395 GO:0006629|GO:0008081
Vimu1g00358 727 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 315 620 - -
Vimu1g00358 727 CDD GDPD_SHV3_repeat_2 317 619 - -
Vimu1g00358 727 CDD GDPD_SHV3_repeat_1 21 313 - -
Vimu1g00358 727 ProSiteProfiles GP-PDE domain profile. 317 620 IPR030395 GO:0006629|GO:0008081
Vimu1g00358 727 SUPERFAMILY PLC-like phosphodiesterases 20 314 IPR017946 GO:0006629|GO:0008081
Vimu1g00358 727 ProSiteProfiles GP-PDE domain profile. 21 314 IPR030395 GO:0006629|GO:0008081
Vimu1g00358 727 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 19 313 - -
Vimu1g00358 727 Gene3D Phosphatidylinositol (PI) phosphodiesterase 20 314 IPR017946 GO:0006629|GO:0008081
Vimu1g00358 727 Gene3D Phosphatidylinositol (PI) phosphodiesterase 316 619 IPR017946 GO:0006629|GO:0008081
Vimu1g00358 727 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 13 713 - -
Vimu1g00358 727 SUPERFAMILY PLC-like phosphodiesterases 316 620 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00358 Vimu-Chr1 2114193 2118005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00358 15 727 Receptor kinase-like Gene Family AT4G26690 51.967 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00358 - - gmx:100792750 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00358 1 2114193 2118005 Vimu1g00358 1 2114193 2118005 ECH
Vimu2g02448 2 20279116 20280163 Vimu1g00358 1 2114193 2118005 PCT
Vimu1g00358 1 2114193 2118005 Vimu2g02454 2 20310184 20314367 PCT