Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00290 ATGGGTAGCTTATGGTTTATACCTTTCGCATGTGTAATTGTTGGGGAAATTGCTTATAGTTTGATTGAGGGTTTGAGTAAGGGAGGATCAATCAAAGGTTGGTGCAATGATATAAGAATTTGGTTGTACGTGAGATCAAGTTCCTTTCTATTTTCCATACTAAGTGTCATCTTAGGATTATTTGGACGTTCAAATCCATCATTTTTACTCACACCAAAAGTCACAGAAGATGATGCTGCACAACGTTACGAGAAAGAGATCATGGAGTTTGGAATCTCTTCTCCTTATTTCACTGTTCTAGCAACAATTGCATTGCTCAATCTGTTTTGTTTGCTTTCAACTTTAAAGGATTTGGTCCTTGCCAAAAGTGCTTTTGCTGGAGAGAAAATGGCACTACAAGTTCTTTTGTGTGGATTTTTGGTTTTTATCAATTTTCCCATATACGAAGCTATTTTTATTAGGAAGGATAAGGGTAGAATGCCAACCTTTATTTCTGTGAAGTCTACTATAATAGCTTTCAGTGCATGTGTCTTCTTCAAACTGTTCAATTGA 552 0.3605 MGSLWFIPFACVIVGEIAYSLIEGLSKGGSIKGWCNDIRIWLYVRSSSFLFSILSVILGLFGRSNPSFLLTPKVTEDDAAQRYEKEIMEFGISSPYFTVLATIALLNLFCLLSTLKDLVLAKSAFAGEKMALQVLLCGFLVFINFPIYEAIFIRKDKGRMPTFISVKSTIIAFSACVFFKLFN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00290 183 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 5 170 - -
Vimu1g00290 183 Pfam Cellulose synthase 9 177 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00290 Vimu-Chr1 1709491 1713715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00290 3 177 Glycosyltransferase AT1G55850 47.458 2.08e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00290 - - pvu:PHAVU_L008300g 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02357 2 19079005 19083015 Vimu1g00290 1 1709491 1713715 PCT
Vimu1g00290 1 1709491 1713715 Vimu2g02358 2 19094094 19098439 PCT