Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02357 ATGGAAATCACTGAGCACACTCCATTGTTTGAGACAAAAAAGAGCAGAGGAAGACTCATCTATAGGTCCTTTGCAACTTCATTATTTCTGTGCATATGCTGCGTATGGATTTACAGAATTAGCCATATCAAAGATGCAAAAGGTAAAGATGGCAAATGGGTATGGCTTGGTATGTTTGGTGCTGAATTCTGGTTTGGCTTTTACTGGGTTCTCACTCAGGCCTTCAGATGGAACCTTATCTTCAGACAACCCTTCAGAAACAGACTCTCTCAGAGATATGAGAAAAAGTTGCCGGGAGTGGACATATTTGTGTGCACAGCAGACCCTGATATTGAACCACCATCGATGGTGATTAACACAGTGCTATCTGTTATGGCTTATGATTATCCAACTGAGAATTTGAATGTGTATCTCTCTGATGATGCTGGGTCTCAAATCACGTTTTATGCTCTACTGGAGGCATCAAACTTTGCAAAACATTGGATTCCATTTAGCAGAAAGTTCAAAGTAGAGCCAAGGTCACCAGCTGCATATTTTAAGAGTATAGTCTCATCAGGTTACTCTGGTGATTCTGATCATGTCAAAGAGCTAACAGCCATCAAGAAATTGTACAACGAAATGGAAAGACGTATTGAAGATGCAACCAAGTTTGGTGAAGTACCCAAAGAAGCACGTCTAAAGCATAAGGGATTTTCTCAGTGGGATTCATATTCTTCTCGACGTGACCATGACACAATTCTTGAAATATTACTTCATAAAAAGGACCCTGAGAATTCAAAAGATGTAGATGGATTCCTTTTACCAACTCTAGTGTATTTGGCTCGTGAGAAGAGACCCCAATATTTCCACAACTTCAAAGCTGGAGCTATGAATTCACTGTTAAGGGTGTCTTCTAATATTAGTGACGGGAAAATCATTCTAAATGTAGACTGTGACATGTACTCAAACAATTCACAGTCTGTGAGAGATGCTCTCTGCTTTTTCATGGATGAAGAGAAAGGTCACAAAATTGCTTATGTGCAGTTCCCTCAGAATTTTGAGAATGTCACTAAGAATGATTTATATGGGAGTGGTCTAATATCTATATCAGAGGTGGAGTTCCCTGGTGCAGACGGTTGTGGTGGTCCTTTGTATGTAGGAAGTGGCTGCTTTCACAGGAGAGAGTCTCTTTGTGGATTGAAATTCAGTGATCAATATAGGAATGACTGGAATATTAATGAAGATTATCAGTTTAAAGAAGCAAGCCTGAAGGAACTGGAAGAAGAATCAAAGGTTCTTGCAAGTTGCACCTATGAGGAAAACACACTATGGGGAAAAGAGATGGGTTTAAGATATGGGTGTCCAGTAGAGGATGTGATAACAGGATTATCTATTCAGTGCCAAGGATGGAAATCAGTGTACTACAATCCACCAAGGAAGGCTTTCTTAGGGTTAGCTCCAACTACCTTGCCTCAAACACTTGTTCAACACAAGAGATGGTCTGAAGGAGACTTGCAAATTTTGCTTTCTAAATATAGCCCTGCATGGTATGGTTTTGGAAGGATCACTTTGGCCCTCCAAATGGGATATAGTATTTATTGCTTATGGGCACCTAGCTCTTTTGCAACACTATACTATTCTATCATCCCTTCATTGTACCTCCTTAGAGGCATTCCCTTGTTTCCAAAGATCTCAAGTCCATGGTTCATACCTTTTGCATATATCATTGTTGGTGAAGCCACTTATAGTTTGTTGGAGTTTTTCTTCTGTGGGGGAACATTTCAAGGTTGGTGGAATGAACTAAGGATATGGCTATACAAGAGAACAAGCTCTTACCTTTTTGCCTGCATTGACACTATCTTGAAGCTTTTTGGATTCTCAGATTTAACTTTTGTAATCACAACTAAGGTTACTGAAGAAGAAGCTTCCAAACGCCATGAGAAGGAAATAATGGAGTTTGGAACCTCCTCTCCAATGCTCACTGTATTAGCAACTCTTGCATTGCTCAATTTGTTCTGTTTTCTGAGTGTGTTGAAGAATGCAGTATTAAGGGAAGGTGGCTTTGGAATTTGTGAGACAATGGTCTTGCAAGTTCTATTGTGTGGATTTTTGGTTCTCATCAACTTGCCCATATACCAAGCACTTTTCTTTAGGAAGGACAATGGAAAATTGCCTGGTTCTGTTGCCACAAAATCAGTGTTGCTAGCACTATGTGTAGTTACCTTCTTTAGCTTTGCATGA 2220 0.3986 MEITEHTPLFETKKSRGRLIYRSFATSLFLCICCVWIYRISHIKDAKGKDGKWVWLGMFGAEFWFGFYWVLTQAFRWNLIFRQPFRNRLSQRYEKKLPGVDIFVCTADPDIEPPSMVINTVLSVMAYDYPTENLNVYLSDDAGSQITFYALLEASNFAKHWIPFSRKFKVEPRSPAAYFKSIVSSGYSGDSDHVKELTAIKKLYNEMERRIEDATKFGEVPKEARLKHKGFSQWDSYSSRRDHDTILEILLHKKDPENSKDVDGFLLPTLVYLAREKRPQYFHNFKAGAMNSLLRVSSNISDGKIILNVDCDMYSNNSQSVRDALCFFMDEEKGHKIAYVQFPQNFENVTKNDLYGSGLISISEVEFPGADGCGGPLYVGSGCFHRRESLCGLKFSDQYRNDWNINEDYQFKEASLKELEEESKVLASCTYEENTLWGKEMGLRYGCPVEDVITGLSIQCQGWKSVYYNPPRKAFLGLAPTTLPQTLVQHKRWSEGDLQILLSKYSPAWYGFGRITLALQMGYSIYCLWAPSSFATLYYSIIPSLYLLRGIPLFPKISSPWFIPFAYIIVGEATYSLLEFFFCGGTFQGWWNELRIWLYKRTSSYLFACIDTILKLFGFSDLTFVITTKVTEEEASKRHEKEIMEFGTSSPMLTVLATLALLNLFCFLSVLKNAVLREGGFGICETMVLQVLLCGFLVLINLPIYQALFFRKDNGKLPGSVATKSVLLALCVVTFFSFA 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02357 739 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 7 727 - -
Vimu2g02357 739 Pfam Cellulose synthase 100 398 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu2g02357 739 Pfam Cellulose synthase 416 733 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu2g02357 739 FunFam Cellulose synthase-like protein E1 235 406 - -
Vimu2g02357 739 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 90 180 IPR029044 -
Vimu2g02357 739 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 241 412 IPR029044 -
Vimu2g02357 739 SUPERFAMILY Nucleotide-diphospho-sugar transferases 100 547 IPR029044 -
Vimu2g02357 739 FunFam Cellulose synthase isolog 90 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02357 Vimu-Chr2 19079005 19083015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02357 8 738 Glycosyltransferase AT1G55850 56.871 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02357 - - gmx:100815825 1246.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02357 2 19079005 19083015 Vimu2g02357 2 19079005 19083015 ECH
Vimu2g02357 2 19079005 19083015 Vimu1g00290 1 1709491 1713715 PCT