Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02358 ATGGCGGCGGTGGAGCATTCTCCATTGTTTGAGACAAAGAGCGCCAAAGGAAGGGTCTTTTACAAGATCTTTTCTTTATCATTGTTTGTGGGGATATGCTTTATCTGGGTTTTCAGAGTGAGTCACATACCTAGAGAAAGTGAAGTTGGGAAATGGGGTTGGATTGGATTGTCTTTTGCTGAACTATGCTTTGGTCTTTATTGGCTTCTCAGACAACCCTTAAGATGGAACCTTCTCTTCAGGGAACCTTTCAGACAAAGACTATCTCAAAGATATGAGAAGGTGTTACCAAAAGTGGACATCTTTGTGTGTACAGCAGATCCAGGAATTGAGCCACCAGTGATGGTTATTAACACAGTGCTATCACTTATGGCTTATGAGTATCCACCAGACAAACTCAGTGTTTATCTTTCAGATGATGCTGGATCAGATATTACCTTCTATGCTCTCTTAGAGGCTTCCATCTTTGCAAAACAATGGCTTCCATTCTGCAGGAAATTCAAGGTGGACCCCACCTCACCAGCTGCCTATTTCAAAACCATTCACTCATCCACTCATGCCAAAGAGTTGGTCACCATCAAGAAATTGTACCAAGATATGGAAAGTCGAATAGAAAATGCAGCCAAGATGGGTAGAGTACCAGAAGAATTACACTCAAAGCATAAAGGGTTTTCACAGTGGGATTCATATTCTTCTCGACGAGACCATGACACAATTCTTCAAATATTACTAGACGAAAAGGACTCGAGTGCCAAAGATGTAGATGGGAATGTTATGCCCCTATTGGTATATTTGTCTCGTGAGAAGAGACCTCAAGTTGCACATAACTTCAAAGCTGGAGCCATGAATTCATTGATAAGAGTGTCATCAATGATTAGCAACGGGGAAATTATCCTTAATGTAGATTGTGACATGTACTCAAACAATTCTCAATCTCTAAGGGATGCACTCTGCTTCCTCATGGATGAAGATAAGGGCCATGAGATTGCTTATGTGCAGACTCCACAGTGTTTTGAGAATATCACCAAGAATGATCTATATGGTGGTGCTCTACGAGTAATTTATGAGATGGGATTGCAATATGGTTGTTCAGTAGAAGATGTTATGACAGGATTGTCTATTAAATGCAGAGGATGGAAATCAGTGTTCTATAATCCTCAAAGGAAAGCTTTCTTAGGTGTAGCTCCAAACACCTTGCCACAAGCACTAGTTCAACATAAGAGATGGTCTGAGGGAGGCTTTCAAATTTTGCTTTCCAAGCATAGTCCAGCATGGTATGCTTATGGATTAATCAGTCCTGGTCTCCAAATGGCATATTGTTACTATCACCTCTGGGTGTTTATTTGCTGGCCAACTGTATATTACTGCATCATCCCTTCACTCTATCTCCTCAAAGGCATTCCATTGTTTCCACAGATGTCAAGTCCATGGTTCATACCTTTTGCATATGTGATTCTTGGCGATTCCTCTTACTGCCTGATGGAGTTTTTGTGGTCAGGAGGCACAATAAAGGGCTGGTGGAATGAGCTACGGATATGGCTGTACAAGAGAACAAGCTCTTACCCCTTTGCTTTTGTTGATACCATCTTGAAGTCTTTTGGCTTTTCAGAATCAACATTTGTAGTATCTGCAAAGGTAGCAGAAGAAGAAGTTTCCCAACGATATGAGAAAGAGATCATGGAGTTTGGAAACTCATCCCCAATGCTCACTGTGCTAGCAACACTTGCATTGCTCAATTTGTTTTGCCTTCTTGGCATGTTCCTAAAGCAAGTGTTCATCAGTGAAGGGGGTCTCAGAATTTTTGATGCAATGGCATTGCAAGTTCTTCTAAGTGGGGTTTTGGTTCTCATCAATGTACCTGTGTACCAAGGACTCTTCCTAAGAAAAGATGAGGGAAGATTACCAATGTCTGTTGCAGCAAAATCTACAGCATTGGCTCTAAGTGCATGTGCCCTCTTTATTTCCTTAAGTTAA 1974 0.4124 MAAVEHSPLFETKSAKGRVFYKIFSLSLFVGICFIWVFRVSHIPRESEVGKWGWIGLSFAELCFGLYWLLRQPLRWNLLFREPFRQRLSQRYEKVLPKVDIFVCTADPGIEPPVMVINTVLSLMAYEYPPDKLSVYLSDDAGSDITFYALLEASIFAKQWLPFCRKFKVDPTSPAAYFKTIHSSTHAKELVTIKKLYQDMESRIENAAKMGRVPEELHSKHKGFSQWDSYSSRRDHDTILQILLDEKDSSAKDVDGNVMPLLVYLSREKRPQVAHNFKAGAMNSLIRVSSMISNGEIILNVDCDMYSNNSQSLRDALCFLMDEDKGHEIAYVQTPQCFENITKNDLYGGALRVIYEMGLQYGCSVEDVMTGLSIKCRGWKSVFYNPQRKAFLGVAPNTLPQALVQHKRWSEGGFQILLSKHSPAWYAYGLISPGLQMAYCYYHLWVFICWPTVYYCIIPSLYLLKGIPLFPQMSSPWFIPFAYVILGDSSYCLMEFLWSGGTIKGWWNELRIWLYKRTSSYPFAFVDTILKSFGFSESTFVVSAKVAEEEVSQRYEKEIMEFGNSSPMLTVLATLALLNLFCLLGMFLKQVFISEGGLRIFDAMALQVLLSGVLVLINVPVYQGLFLRKDEGRLPMSVAAKSTALALSACALFISLS 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02358 657 FunFam Cellulose synthase isolog 89 186 - -
Vimu2g02358 657 Pfam Cellulose synthase 99 357 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu2g02358 657 SUPERFAMILY Nucleotide-diphospho-sugar transferases 114 468 IPR029044 -
Vimu2g02358 657 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 232 357 IPR029044 -
Vimu2g02358 657 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 180 IPR029044 -
Vimu2g02358 657 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 7 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02358 Vimu-Chr2 19094094 19098439 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02358 356 651 Glycosyltransferase AT1G55850 57.432 2.09e-106 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02358 - - atri:130797276 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00290 1 1709491 1713715 Vimu2g02358 2 19094094 19098439 PCT