Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03402 ATGAAAGAAGACGTAGGTGTAGAAATGGCGGCAGCGAAGTGCGAAGACCCAGAAAAGGCACACGTGGAAGACGAAGAAGAATCTCCTATAGAGGAAGTAAGATTAACGGTGAGTAACACGGATGACCCGACCCAACCGGTATGGACCTTCCGAATGTGGTTCCTGGGTTTGGTCTCCTGCTCCCTCTTGTCCTTCCTCAACCAGTTCTTCGCCTACCGGACGGAGCCACTCGTCATCACTCAAATAACCGTGCAGGTGGCCACCCTCCCCATTGGCCACCTAATGGCGGCGCTCCTCCCAAAAACCACTTTCCGGATCCCCGGGTTCGGGTCGAGACAGTTCTCATTCAACCCGGGCCCCTTCAACATGAAGGAGCACGTCCTGGTGACCATATTCGCCAACGCAGGCAGCGCATTCGGGTCCGGGTCGCCCTACGCGGTGGGCATCATAAACATCGTGAAAGCCTTTTACGGTAGGAAAATATCTTTCCTTGCTTCATGGCTCCTCGTCATCACCACTCAGGTGTTAGGATACGGCTGGGCAGGGTTGCTGAAGAAGTACGTGGTGGAGCCTGCCCACATGTGGTGGCCCGGTACCCTCGTTCAGGTCTCTCTTTTCCGGGCTTTGCATGAGAAAGATGATCGCAGTTTTTCGAGGGCAAAGTTTTTCTTTATTGCACTGGTTTGCAGTTTTTTTTGGTATGTGATCCCTGGATACTTCTTCTCAACGCTCACAAACATATCATGGGTGTGTTGGATATTCTCCAAGTCAGTCACGGCTCAGCAGCTAGGTTCTGGAATGAATGGCTTGGGACTTGGTGCATTCACACTAGACTGGTCTGCTGTAGCATCATTCTTGTTCAGCCCTCTCATCTCACCCTTCTTTGCCATTGTCAATATTTTTGTTGGCTACTCAGTCATAGTGTATGTTGTGATTCCTGTAGCATACTGGGGCCTCAACTTGTACAATGCAAATAGGTTTCCTATTTTCTCATCAGACTTGTTCACATCCAATGGCCAACAATACAACATATCTGCAATTGTCAATGAAAAGTTTGAGCTAGATATTGACAAGTATCACCAACAAGGTCGAATTAATCTTAGTGTGTTCTTCTCTCTCACTTACGGATTTGGATTTGCCACCATATCATCCACCCTTACACATGTTGCTTTCTTCTATGGAAGGGAGATTATGGATCGATATCGTGCTGCAGCAAAAGGTAAAGAAGATATCCACACAAGACTGATGAAAAAATACAAAGACATACCTTCTTGGTGGTTTTATGTGATGCTGGGCGTGACGCTTCTGGTTTCTCTCATGCTATGCATCTTTCTAAATGACCAGGTTCAGATGCCGTGGTGGGGACTTGTCTTTGCTACAGCCTTGGCCTTTATATTTACACTCCCAATTAGCGTCATAACTGCTACCACAAACCAGACACCAGGACTAAACATTATTACCGAGTATATCTTTGGTCTCATTTATCCCGGAAGACCAATAGCTAATGTATGCTTCAAAACCTTTGGTTATATAAGCATGGCTCAGGCTGTCTCCTTCCTCAGCGATTTCAAGCTTGGCCACTACATGAAGATCCCTCCAAGATCAATGTTTTTAGTACAGTTCATCGGTACAATACTTGCTGGAACCATAAGCACTGGTGTAGCATGGTGGTTGCTGAACTCTGTAAATAACATATGCCATAGAGATCTTCTTCCTGAAGACAGTCCCTGGACATGTCCAAGTGATCGTGTTTTCTTTGATGCATCAGTTATCTGGGGTCTGGTGGGACCAAGGAGGATCTTTGGTTCTGATGGAAACTACCGAGCATTGAATTGGTTTTTCCTTGGAGGTGCTATAGGGCCAATACTAGTATGGCTATTGCACAAGGCATTCCCCAAGCAGTCATGGATTCCTTTGATCAATCTTCCAGTCCTTCTGGGGGCAACTGGGATGATGCCACCGGCAACAGCAATGAACTATAATGCTTGGATTATAATTGGTACCATTTTCAACTTCTTTGTCTTCCGTTACAGGAAGGTGTGGTGGCAGAGATACAACTATGTTCTTTCAGCAGCACTTGATGCAGGGGTTGCTTTTATGGCTGTTGCGCTCTACTTCGCAGTGGGCATTGAAAACAGAAGTATCTCTTGGTGGGGAAATGATGGGGAGCATTGTCCCCTTGCAACTTGCCCTACAGCACAGGGCATAGTGGTTGATGGCTGCCCTGTATTTTAA 2235 0.4671 MKEDVGVEMAAAKCEDPEKAHVEDEEESPIEEVRLTVSNTDDPTQPVWTFRMWFLGLVSCSLLSFLNQFFAYRTEPLVITQITVQVATLPIGHLMAALLPKTTFRIPGFGSRQFSFNPGPFNMKEHVLVTIFANAGSAFGSGSPYAVGIINIVKAFYGRKISFLASWLLVITTQVLGYGWAGLLKKYVVEPAHMWWPGTLVQVSLFRALHEKDDRSFSRAKFFFIALVCSFFWYVIPGYFFSTLTNISWVCWIFSKSVTAQQLGSGMNGLGLGAFTLDWSAVASFLFSPLISPFFAIVNIFVGYSVIVYVVIPVAYWGLNLYNANRFPIFSSDLFTSNGQQYNISAIVNEKFELDIDKYHQQGRINLSVFFSLTYGFGFATISSTLTHVAFFYGREIMDRYRAAAKGKEDIHTRLMKKYKDIPSWWFYVMLGVTLLVSLMLCIFLNDQVQMPWWGLVFATALAFIFTLPISVITATTNQTPGLNIITEYIFGLIYPGRPIANVCFKTFGYISMAQAVSFLSDFKLGHYMKIPPRSMFLVQFIGTILAGTISTGVAWWLLNSVNNICHRDLLPEDSPWTCPSDRVFFDASVIWGLVGPRRIFGSDGNYRALNWFFLGGAIGPILVWLLHKAFPKQSWIPLINLPVLLGATGMMPPATAMNYNAWIIIGTIFNFFVFRYRKVWWQRYNYVLSAALDAGVAFMAVALYFAVGIENRSISWWGNDGEHCPLATCPTAQGIVVDGCPVF 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03402 744 NCBIfam OPT family oligopeptide transporter 31 710 IPR004813 GO:0035673
Vimu11g03402 744 Pfam OPT oligopeptide transporter protein 48 708 IPR004813 GO:0035673
Vimu11g03402 744 NCBIfam small oligopeptide transporter, OPT family 25 712 IPR004648 GO:0055085
Vimu11g03402 744 PANTHER ISP4 LIKE PROTEIN 20 743 IPR004648 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03402 Vimu-Chr11 55083458 55086541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03402 23 743 Organic Solute Cotransporters AT5G64410 79.889 0.0 1238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03402 - - vra:106766347 1415.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03402 11 55083458 55086541 Vimu2g00484 2 2770507 2771070 PCT
Vimu2g00486 2 2775937 2776539 Vimu11g03402 11 55083458 55086541 PCT