Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03243 GCAAGCATCGACGACACCTTGGTCAGGACAACTTTTGTTCCTTCTTCATTCAAGTGTTGGCTTGAAATTGCAGCAACGATAATGAAGAAGAAGCAGAGGGAAGAAATGAGTACACTCTTTCTCTTCAGCCTTTTAACGCTCACTGTAAGCATAAATGTTGCTTACGGTGGGGGCAACTCACAAGATCAAAACCCCTTCACGCCAAAGGCTTACGTCTCACGTTATTGGGACAGACACGTCCGTAACACCTTCCCAAAACCATCCTTCCTTCTTTCCAAAGCCTCTCCACTCACCGCCGCCGACACTGCCTCCTTCACCAACCTCGCCGCCACCAACACTCTCTCCACTCGCTTGCCTGAGTTCTGCTCCGCTGCGCACCTACTCTGCTTCCCGGAGGTCCGTCCAAGCCTCGAGAAACACACCGAAGATGAAAATTTTCAAACCTACGACGACGGCCAGAATTTCACTAACTACGGAACGAATAGAGCAGGTGGAATCGACACGTTCAAAAACTACTCCAACGGTCTCTTCAGCACTCCGGTCAACGATTTCCGCCGATACAGCCGCGGAGCCGCTGGTCACCAAGAAACCTTCACCGGCTACGCCAGCGACACCAACGTCGCTGACCAGAGCTTCAACACGTACGGCACCAACACGGCCGGAGGCTCCGGCGAGTTCAAAAATTACTCCAGCAATTCAAACGTCCCCAACCTGCGATTCACCACCTACTCCGACCTCACCGCTGGGAGGACACAGTCGTTCTCTCGATACAGCGAAGACGGAAACTCAGGCGGGCAGACATTCCAGAGCTATGGCAAGAATTCCGCCGGCGCTGGGAACGATTTTACTGGCTACGGAACAAACTCCAATGTTGCCTCATCTGGTTTCACGAACTACGGCAAGGGAGGCGCCATTCCGAACGACACCTTCACCAACTATGGCGTCGATATGAACGTCCCTGAAATAACCTTCAAGAGTTATGCAGACGGAACGCACGGTGGCAGTGAGAGTTTTGCCAACTACAGGGACCAGTCCAACGTTGGTGACGACTCCTTCCAATCATATGCTAAGAACACCAAAGAAGGGACCCAAGTGGATTTCAAAAACTACGGCAACTCCGCCAACCCAGGTTCCGACACTTTCAAAGGCTATGCCAAAGGAGCAGAAGGGGATCACAAGGTTGGCTTCACCGGCTACGGCGTTAACACGAACGCTACCTTTAAGGATTACGCTAAAGAGGGTGTTTCCTTCGCTTCTTACAACACCTCTTCCTCTTCTTCAACTGTCGGTGGCAGTTTGGTGAAAAGGTGGGTGGAACCGGGTAAATTCTTTCGCGAGAGCATGTTGAAGGAAGGAACCGTGATGGCCATGCCAGACATAAGAGATAAAATGCCTCAAAGATCATTTTTGCCCCGCTCTCTTCTGGTGAAATTGCCCTTCTCTTCTTCAAAGATTGAGGAGCTGAAGAGCGTGTTCAAGGTGTCTGATAACTCCTCCATGGAGAAGATGATGATGGAGTCTTTGGGTGAGTGCGAGAGAGCACCCAGCGTCGGAGAGATCAAACGTTGTGTGGGGTCTGTCGAGGATATGATTGATTTTGCAACCTCTGTTTTGGGCCATGATGTCGGGGTTTGGACCACTGAGAACGTAAACGGGTTCAGTAAGAATGTAATGGTGGGTCGGGTCAAAGGAATGAATGGTGGCAAGGTAACCAAATCCGTGTCCTGTCACCAGAGCTTATTCCCTTATCTGCTTTACTACTGTCACTCTGTTCCTAAGGTTCGGGTGTACGAAGCGGATCTCTTGGATCCAGAAAGCAAGGCGAAGATTAACCACGGTGTTGCTATATGTCACCTGGACACCAGTGCGTGGAGCCCCACCCATGGTGCATTCGTGGCTCTTGGGTCGGGTCCGGGTGAGATTGAAGTGTGTCACTGGATCTTTGAGAATGACATGACTTGGACCATTGGTGAGTGA 1977 0.5104 ASIDDTLVRTTFVPSSFKCWLEIAATIMKKKQREEMSTLFLFSLLTLTVSINVAYGGGNSQDQNPFTPKAYVSRYWDRHVRNTFPKPSFLLSKASPLTAADTASFTNLAATNTLSTRLPEFCSAAHLLCFPEVRPSLEKHTEDENFQTYDDGQNFTNYGTNRAGGIDTFKNYSNGLFSTPVNDFRRYSRGAAGHQETFTGYASDTNVADQSFNTYGTNTAGGSGEFKNYSSNSNVPNLRFTTYSDLTAGRTQSFSRYSEDGNSGGQTFQSYGKNSAGAGNDFTGYGTNSNVASSGFTNYGKGGAIPNDTFTNYGVDMNVPEITFKSYADGTHGGSESFANYRDQSNVGDDSFQSYAKNTKEGTQVDFKNYGNSANPGSDTFKGYAKGAEGDHKVGFTGYGVNTNATFKDYAKEGVSFASYNTSSSSSTVGGSLVKRWVEPGKFFRESMLKEGTVMAMPDIRDKMPQRSFLPRSLLVKLPFSSSKIEELKSVFKVSDNSSMEKMMMESLGECERAPSVGEIKRCVGSVEDMIDFATSVLGHDVGVWTTENVNGFSKNVMVGRVKGMNGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDPESKAKINHGVAICHLDTSAWSPTHGAFVALGSGPGEIEVCHWIFENDMTWTIGE 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03243 658 SMART BURP_2 441 657 IPR004873 -
Vimu11g03243 658 ProSiteProfiles BURP domain profile. 443 657 IPR004873 -
Vimu11g03243 658 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 48 656 - -
Vimu11g03243 658 Pfam BURP domain 443 655 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03243 Vimu-Chr11 52433129 52435182 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03243 - - var:108321369 1221.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03243 11 52433129 52435182 Vimu10g01214 10 12031268 12033251 ECH
Vimu11g03243 11 52433129 52435182 Vimu11g03243 11 52433129 52435182 ECH
Vimu7g03714 7 32466009 32467997 Vimu11g03243 11 52433129 52435182 PCT