Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01214 ATGAACATCCACTTCTTCTGCTGCTTCTTCTTGTCGCTCTCATCTTTCCATGTTTCTCTAGCAACCCGCCAACGCATAAACCCATTCAGCCCCAAAGCCTCCCTCATTCGCTATTGGAACACTCGACTCACCAATACTGTTCCAATCCCTCACTTTCTTCTCGCTAAAGCTTCACCTCTCACCCCACAACACTATGCCATTCTCAACAAACTTTTAAACGAAAAACCCATACCTTACATTCCCAAGCTTCACCAATCCCTCTGTTCTTCACCCAACTTATTCTGTTCCTTCGAAGATGCATCAAACACGCACACACTACAGCGCAAAAACGACGACTCCAACTTCGCCGTTTACAACAACAAACACTTCGCTAACTACGGCTCCTCTAAAGTCGACGGAGTCGACTCCTTCAAAAACTACTCCAACGGCCTAAACGCGAACAACGATGCGTTTCGGAGATACAGCGAGTCCTCGACGCGCCGCGCCGAACAGTTCAAGAACTACGCCGATAACGGTAACGTTGCGAATACGAACTTCTCCAGCTACGGTTCCGCGGCTGCTCAATCCTCCAGCGATTTCAACAACTACGATAAAACGGTGAACGTTCCCAACCTCGGTTTCACCACCTACGACTCCGGCTCCTCCAACCACAAACTATCGTTCGCCAGCTACGGCAACGAAACAAATTCCGGATCACAGTCCTTCTCGAGCTACGGAAAACGCGTCATTGGCGGAACCAGCGAGTTCACGAATTACGCCAGCGACGCGAACATTCTGCAATCGCATTTCAACAATTACGGCGACTTCAGCGCCGGTGCAGTCAACGACTCCTTCAAGTCCTACAGCTTCAACGGTAACAATCCGCGGAACGATTTCAAAACATACGGGGCCGGGTCGAGAGGGTCCGCCGCCGAAAATTTCATCAGTTACCGGAACCGCGCCAATGTCGGCGACGACTCGTTCCAAAGCTACGCCGCGAGGTCGAAGTCCGGCACCGCCACATTCGCGAACTACGGAATGTCGTTCAACGTCGGAAACGACAGTTTCGCGGAGTACGGAAAGGGCGCGACGGGGAAGAGCTCGTTCGGGTTTAAATCTTACGGGTTGGGCCGCGCGTTTAAGGTGTACAACAAAGACGGGGCGTCATTTTCGGGGTATCGTAATTTCAGCGCAACAAGTGGCAGAGTTGTAAATAAGCGCGTGGAGCCGGGTAAGTTCTTTAGAGAATCCATGATGAAGGAAGGGAACGTGATTTTAATGCCTGACATTAAGGATAAAATGCCTGCAAGGTCGTTTTTGCCCCTGGCGATTGCTTCGAAATTACCGTTCTCATCGGCAAGGATAGACGAAATGAGGGAATTGTTCAACGCGCGGGAGGGGTCTTCTACAGAGCGCGTGATAGTTAACGCATTGGGTGAGTGCGAGAGGGAGCCGAGCAGGGGAGAGACGAAACGGTGTGTTGCGTCTGCAGAGGAAATGATAGAGTTTGCGGCATCGGTGATGGGTCCCAGTGTTGTGGTGAGGACCACGGAGAATTTGAACGGTTCAGGATCGAGTGTGATGATTGGTAAGGTCTACCCAGTGGACGGTGGAAAAGTAACGAAATCAGTTTCGTGTCATCAGAGTTTGTACCCTTACTTGCTGTATTATTGCCACAGTGTACCAGAAGTGAGAGTTTATGAAGCTGATATTCTTAACGTGGAGACGAAGGAGAAGATGAATGACGGTGTTGCCATCTGTCATATTGACACGTCAGCGTGGGGCCCCGAACACGGGGCATTCTTGGCATTGGGGTCAGGCCCTGGGAAAATTGAGGTTTGCCACTGGATTTTCGAGAACGACATGACGTGGACCACTTGA 1860 0.5081 MNIHFFCCFFLSLSSFHVSLATRQRINPFSPKASLIRYWNTRLTNTVPIPHFLLAKASPLTPQHYAILNKLLNEKPIPYIPKLHQSLCSSPNLFCSFEDASNTHTLQRKNDDSNFAVYNNKHFANYGSSKVDGVDSFKNYSNGLNANNDAFRRYSESSTRRAEQFKNYADNGNVANTNFSSYGSAAAQSSSDFNNYDKTVNVPNLGFTTYDSGSSNHKLSFASYGNETNSGSQSFSSYGKRVIGGTSEFTNYASDANILQSHFNNYGDFSAGAVNDSFKSYSFNGNNPRNDFKTYGAGSRGSAAENFISYRNRANVGDDSFQSYAARSKSGTATFANYGMSFNVGNDSFAEYGKGATGKSSFGFKSYGLGRAFKVYNKDGASFSGYRNFSATSGRVVNKRVEPGKFFRESMMKEGNVILMPDIKDKMPARSFLPLAIASKLPFSSARIDEMRELFNAREGSSTERVIVNALGECEREPSRGETKRCVASAEEMIEFAASVMGPSVVVRTTENLNGSGSSVMIGKVYPVDGGKVTKSVSCHQSLYPYLLYYCHSVPEVRVYEADILNVETKEKMNDGVAICHIDTSAWGPEHGAFLALGSGPGKIEVCHWIFENDMTWTT 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01214 619 Pfam BURP domain 406 618 IPR004873 -
Vimu10g01214 619 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 11 618 - -
Vimu10g01214 619 SMART BURP_2 404 619 IPR004873 -
Vimu10g01214 619 ProSiteProfiles BURP domain profile. 406 619 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01214 Vimu-Chr10 12031268 12033251 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01214 - - gmx:100784264 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03243 11 52433129 52435182 Vimu10g01214 10 12031268 12033251 ECH
Vimu10g01214 10 12031268 12033251 Vimu10g01214 10 12031268 12033251 ECH