Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00873 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAATTTCAAGAAGAGAGATTCATGCCAAACTTGTGGATACCCTAAATTTGGAGGTCCTGACCCAACAACTTACAGATACAACTGGACTGAAGCCTTGGCAGGGGACTGGTATTGCAGTTCTATGAACTGTGGAGCTCATAACTATGCCAGTAGATCAAGCTGCTACAGATGTGGTGCATTGAAGGATGGTTATTCTTGCAGATTTGGGGGAAACATGGATCCATGTGGAGGATATGCTTCTGATTGTCCTCCTGGGTGGAAAACTGAATTGGGTGTGGAGTCCATAACTATGCGAGCAGAACAGAATGTTTCAAGTGCAAAACACCCAGAAATTTTGGTGACGCGGACTGAGAGGGGAAATTTGAACCACCGCTAA 423 0.4586 MSWSGGDWMCGACQHINFKKRDSCQTCGYPKFGGPDPTTYRYNWTEALAGDWYCSSMNCGAHNYASRSSCYRCGALKDGYSCRFGGNMDPCGGYASDCPPGWKTELGVESITMRAEQNVSSAKHPEILVTRTERGNLNHR 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00873 140 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Vimu10g00873 140 PANTHER ZINC FINGER PROTEIN 6 79 - -
Vimu10g00873 140 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Vimu10g00873 140 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Vimu10g00873 140 SMART zf_4 6 30 IPR001876 -
Vimu10g00873 140 SMART zf_4 50 76 IPR001876 -
Vimu10g00873 140 Gene3D - 44 79 - -
Vimu10g00873 140 Gene3D - 1 35 - -
Vimu10g00873 140 Pfam Zn-finger in Ran binding protein and others 49 77 IPR001876 -
Vimu10g00873 140 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Vimu10g00873 140 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Vimu10g00873 140 SUPERFAMILY Ran binding protein zinc finger-like 49 79 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00873 Vimu-Chr10 7767000 7767992 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00873 - - gmx:100792208 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00995 7 9778427 9779179 Vimu10g00873 10 7767000 7767992 PCT
Vimu10g00873 10 7767000 7767992 Vimu7g00996 7 9789350 9790457 PCT