Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00996 CCTTATTATCTAGTTACATTGAATGATGGAACAAATAATTATTGTTTAAGAGTTCAATTGAACATATTGATCAGGAAAATGAGCTGGTCTGGAAGAGATTGGATGTGTTGTGTTTGCCAGCACATAAATTTCAAGAAGAGGGAAGCATGCCAGAGTTGTGGATACCCCAAGTATGGAGGACCTGACCCTTCAACCTACAGATACAACAGGACTGAAGCTTTGGCAGGGGACTGGTTCTGCAACTGTGGAGGTCACAACTATGCCAGTCGATCAAACTGCTACAGATGTGGTGCAATGAAAGATGATTATTCTTCAGGTTATGCCAACAACTCTGGAGGGTATGGATCTGACACTTTCCCTCCAGGATGGAAGAGTGGAGACTGGCTTTGCCCAAGACATGGATGTGGAGTGCACAACTATGCCAGCAGGACAGAATGCTATAAATGCAAAATGCCAAGGGATTTTGGTGAGAACAGTTTAGTGTTACGTTTCATCTGTTCTTTTTGA 507 0.428 PYYLVTLNDGTNNYCLRVQLNILIRKMSWSGRDWMCCVCQHINFKKREACQSCGYPKYGGPDPSTYRYNRTEALAGDWFCNCGGHNYASRSNCYRCGAMKDDYSSGYANNSGGYGSDTFPPGWKSGDWLCPRHGCGVHNYASRTECYKCKMPRDFGENSLVLRFICSF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00996 168 ProSitePatterns Zinc finger RanBP2-type signature. 34 53 IPR001876 -
Vimu7g00996 168 SUPERFAMILY Ran binding protein zinc finger-like 118 155 IPR036443 -
Vimu7g00996 168 Gene3D - 25 61 - -
Vimu7g00996 168 Gene3D - 119 155 - -
Vimu7g00996 168 Gene3D - 68 102 - -
Vimu7g00996 168 SMART zf_4 32 56 IPR001876 -
Vimu7g00996 168 SMART zf_4 76 99 IPR001876 -
Vimu7g00996 168 SMART zf_4 126 152 IPR001876 -
Vimu7g00996 168 Pfam Zn-finger in Ran binding protein and others 124 152 IPR001876 -
Vimu7g00996 168 SUPERFAMILY Ran binding protein zinc finger-like 72 102 IPR036443 -
Vimu7g00996 168 ProSiteProfiles Zinc finger RanBP2 type profile. 29 59 IPR001876 -
Vimu7g00996 168 ProSiteProfiles Zinc finger RanBP2 type profile. 124 155 IPR001876 -
Vimu7g00996 168 SUPERFAMILY Ran binding protein zinc finger-like 27 60 IPR036443 -
Vimu7g00996 168 ProSitePatterns Zinc finger RanBP2-type signature. 128 149 IPR001876 -
Vimu7g00996 168 PANTHER ZINC FINGER PROTEIN 70 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00996 Vimu-Chr7 9789350 9790457 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00996 - - gmx:100780120 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00873 10 7767000 7767992 Vimu7g00996 7 9789350 9790457 PCT