Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01756 ATGCATTTGTTTTATGCAGCTAGCCCCTTCAAATATCTGAAACACAGGATTGATGTGCTTGATAAGGAAAACTTGATTTGCAAATACACCATGATTGAAGGGGATCCTTTAGGTGACAGACTTGAGTCTATAGGTTATGAGGTAAAGTTTGAGGCCACTAGTGATGGAGGTTGCCTCTGCAAAATGACTAGCAATTACAATACCATTGGGGAGTTTGATGTTAAAGAGGAAGAACTAAAGGAAGGAAGGGAGAGCACTATTGCTATTTACAAAGTTGTGGAGTCATACCTGCTGGAGAATCCACAAGTATATGCATAA 318 0.3962 MHLFYAASPFKYLKHRIDVLDKENLICKYTMIEGDPLGDRLESIGYEVKFEATSDGGCLCKMTSNYNTIGEFDVKEEELKEGRESTIAIYKVVESYLLENPQVYA 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01756 105 CDD Bet_v1-like 7 97 - -
Vimu7g01756 105 Gene3D - 2 103 IPR023393 -
Vimu7g01756 105 PANTHER - 9 104 - -
Vimu7g01756 105 FunFam Major pollen allergen Bet v 1-A 2 104 - -
Vimu7g01756 105 Pfam Pathogenesis-related protein Bet v 1 family 8 100 IPR000916 GO:0006952
Vimu7g01756 105 PRINTS Major pollen allergen Bet V1 signature 89 99 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01756 105 PRINTS Major pollen allergen Bet V1 signature 11 30 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01756 105 PRINTS Major pollen allergen Bet V1 signature 30 43 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01756 105 PRINTS Major pollen allergen Bet V1 signature 55 71 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01756 105 SUPERFAMILY Bet v1-like 6 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01756 Vimu-Chr7 16190280 16190597 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01756 - - gmx:100527307 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01756 7 16190280 16190597 Vimu7g01756 7 16190280 16190597 ECH
Vimu7g01756 7 16190280 16190597 Vimu10g00152 10 864106 867281 PCT
Vimu10g00153 10 868331 868943 Vimu7g01756 7 16190280 16190597 PCT