Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03856 ATGGAGAGTACGCTTAAGTCCTTTAGAGATGGTGAGTCGGTGCTGGACCTCAGCCCAAGATCCTGCGTTGCTGGTGGTGTTGAGGATGTGTACGGCGAGGATCGTGCTACTGAAGATCAACTTGTCACCCCTTGGACTTTCTCTGTTGCTAGTGGTTACTCTTTACTGAGAGATCCACAATACAATAAAGGGCTTGCTTTCACTGAGAAAGAGAGGGATGCACACTATTTGCGTGGCCTCTTACCTCCTATTATTAGCTCCCAGCAACTTCAGGAAAAGAAACTTATGCATAACATCCGCCAATATGAGGTTCCCTTGCAAAAGTACATGGCCATGATGGATCTTCAGGAGAGGAATGAAAGGCTGTTTTACAGACTTCTTATTGACAATGTTGAAGAATTACTCCCGATTGTATATACTCCGGTTGTTGGTGAGGCTTGCCAGAAATATGGGAGCATATTCAAGCGTCCTCAGGGTCTTTACATTAGTTTGAAAGAAAAGGGTAAAATTCTCGAGGTTTTGAAAAACTGGCCAGAAAGGAGTATTCAAGTTATTGTTGTAACAGATGGTGAACGGATTTTGGGACTCGGGGATCTAGGATGCCAGGGTATGGGAATTCCTGTTGGTAAATTGGCTTTGTACTCGGCGCTAGGAGGAGTTCGTCCTTCAGCATGTTTACCAATTACGATCGATGTGGGGACAAATAACGAGAAATTACTGAATGATGAGTTTTACATTGGCCTTAGACAAAAGAGGGCAACTGGGAAGGAGTATTATGACCTTCTGCATGAGTTCATGTCTGCAGTGAAGCAAAACTACGGCGAAAAAGTTCTTGTTCAGTTTGAAGATTTTGCAAATCACAATGCTTTTGAGTTGCTTGCAAAATACGGTACAACTCATCTGGTTTTCAACGACGATATACAGGGGACTGCATCTGTTGTTCTAGCTGGAGTTGTAGCAGCCTTGAAGCTCATTGGTGGTACCCTACCTGAGCATACATTCCTCTTCCTTGGTGCTGGAGAAGCGGGAACTGGTATAGCCGAGCTAATTGCTCTTGAGATGTCAAAGCAGACTAAATCACCTATTGAAGAGAGTCGTAAGAAGATATGGCTTGTAGATTCAAAGGGTTTAATTGTTAGTTCACGGGCGAATTCACTTCAACACTTCAAGAAGCCTTGGGCTCATGAACACGAACCTGTTAGCACTCTCATTGAGGCTGTTAAGGTGATCAAGCCTACGGTTCTGATTGGATCATCGGGAGTAGGAAAAACATTTACAAAGGAAGTAGTTGAGGCTATGACAGCAAACAATGAAATTCCCCTCATTTTGGCTCTTTCCAATCCAACCTCCCAGTCTGAGTGTACAGCTGAAGAGGCATACCAATGGAGTGAGGGCCGTGCAATCTTCGCTAGCGGGAGTCCATTTGATCCTGTTGAATACAAAGGCAAAGTTTATTATTCTGGCCAGGCCAACAATGCATACATTTTCCCAGGCTTTGGTTTGGGTTTAGTAATGTCGGGAGCGATCCGAGTACACGATGACATGCTTCTAGCAGCATCCGAAGCCTTGGCAAAGCAAGTGACCGAAGAGAACTACAAAAAAGGCTTGACTTATCCACCTTTCTCTGATATCAGAAAAATCTCAGCTAACATAGCTGCAAATGTTGCTGCCAAGGCATATGAACTAGGCTTGGCTACGCATCTTCCTCGTCCTCAGGATCTTGTCAAGTATGCTGAGAGTTGCATGTATTCACCTTTGTACCGCAACTATAGGTGA 1776 0.4431 MESTLKSFRDGESVLDLSPRSCVAGGVEDVYGEDRATEDQLVTPWTFSVASGYSLLRDPQYNKGLAFTEKERDAHYLRGLLPPIISSQQLQEKKLMHNIRQYEVPLQKYMAMMDLQERNERLFYRLLIDNVEELLPIVYTPVVGEACQKYGSIFKRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYSALGGVRPSACLPITIDVGTNNEKLLNDEFYIGLRQKRATGKEYYDLLHEFMSAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLPEHTFLFLGAGEAGTGIAELIALEMSKQTKSPIEESRKKIWLVDSKGLIVSSRANSLQHFKKPWAHEHEPVSTLIEAVKVIKPTVLIGSSGVGKTFTKEVVEAMTANNEIPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEYKGKVYYSGQANNAYIFPGFGLGLVMSGAIRVHDDMLLAASEALAKQVTEENYKKGLTYPPFSDIRKISANIAANVAAKAYELGLATHLPRPQDLVKYAESCMYSPLYRNYR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03856 591 PANTHER MALIC ENZYME-RELATED 20 591 - -
Vifa6g03856 591 SMART malic_2 116 297 IPR012301 GO:0004471
Vifa6g03856 591 PIRSF ME 26 591 IPR001891 GO:0004470|GO:0004471
Vifa6g03856 591 Gene3D - 50 304 IPR037062 GO:0004471
Vifa6g03856 591 SMART Malic_M_2 307 560 IPR012302 GO:0051287
Vifa6g03856 591 FunFam Malic enzyme 305 591 - -
Vifa6g03856 591 FunFam Malic enzyme 50 304 - -
Vifa6g03856 591 Gene3D - 305 591 - -
Vifa6g03856 591 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 307 590 IPR036291 -
Vifa6g03856 591 Pfam Malic enzyme, NAD binding domain 307 559 IPR012302 GO:0051287
Vifa6g03856 591 CDD NAD_bind_1_malic_enz 307 585 - -
Vifa6g03856 591 Pfam Malic enzyme, N-terminal domain 116 296 IPR012301 GO:0004471
Vifa6g03856 591 PRINTS Malic enzyme signature 182 211 IPR001891 GO:0004470|GO:0004471
Vifa6g03856 591 PRINTS Malic enzyme signature 334 350 IPR001891 GO:0004470|GO:0004471
Vifa6g03856 591 PRINTS Malic enzyme signature 303 319 IPR001891 GO:0004470|GO:0004471
Vifa6g03856 591 PRINTS Malic enzyme signature 437 453 IPR001891 GO:0004470|GO:0004471
Vifa6g03856 591 PRINTS Malic enzyme signature 218 240 IPR001891 GO:0004470|GO:0004471
Vifa6g03856 591 PRINTS Malic enzyme signature 278 296 IPR001891 GO:0004470|GO:0004471
Vifa6g03856 591 PRINTS Malic enzyme signature 122 146 IPR001891 GO:0004470|GO:0004471
Vifa6g03856 591 ProSitePatterns Malic enzymes signature. 303 319 IPR015884 GO:0004471
Vifa6g03856 591 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 29 306 IPR046346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03856 Vifa-Chr6 1275600197 1275604152 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03856 K00029 - gmx:100782096 1090.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03856 6 1275600197 1275604152 Vifa5g00233 5 31675565 31679664 ECH
Vifa6g03856 6 1275600197 1275604152 Vifa2g04268 2 1253906347 1253909717 ECH
Vifa6g03856 6 1275600197 1275604152 Vifa6g03856 6 1275600197 1275604152 ECH