Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00233 ATGATCTCCTCAACCAGATGCAACTTCCTGGGTAACACAGGATTAGGTGGGTGTGGTAACATTTGTGGTGGACAGAGAAGAGGCTATGGACCTTGGAGGGTGAGCTGTATGTCACCAATCAATGACAGAAATGGGAGCGTTGTTATGGAGACACCTTTGAAGGAAATTAAGAGTGAGCCTGTGGTGGAAGATGTGGACAATAACCCGATCTCCGGTGGCGGTCCTCGAGATGTTTATGGAGAGGATAAGGCTACTGAGGATCATTCTGTTACTCCTTGGAGTGTTTCTGTTGCTAGTGGTTACACTTTGTTGCGAGATCCGCACTTCAACAAAGGGTTGGCGTTCACTGAAAAAGAGAGGGATGCTCACTACTTGCGCGGTCTTCTTCCCCCAACAACTATTCCTCAAGAAACTCAGGTGAAGAAAATGATCCAGCACATACGCCAATATCAAGTTCCGTTGCAGCAATACACTGCTATGATGGATTTACAGGAAAGAAACGAACGTCTGTTTTACAAACTTCTCATTGAACACGTTGAAGAGTTACTCCCAATTGTGTATACTCCAACTGTTGGTGAGGCTTGCCAGAAATACGGAGACATTTTTATGCGTCCACAGGGTCTTTATATAAGTTTGAATGAGAAAGGGAGGATTCTTGAAGTACTGAGGAATTGGCCGGAGAAGAACATTCAAGTCATAGTTGTAACCGATGGAGAACGGATCTTAGGTCTTGGTGATCTAGGTTGTCAGGGGATGGGAATACCGGTGGGGAAGCTTTCTTTATATACGGCACTAGGAGGAGTTCGACCTTCAGCTTGCCTGCCTATAACAATTGATGTCGGGACAAACAATGAGAAGCTTCTCAATGATGAGTTATATATCGGGCTAAAGCGAAGACGAGCAACCGGGCAAGAATATTCTGAACTCATACACGAATTTATGACTGCAGTCAAGCAAACATACGGGGAAAAAGTCCTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATTTGCTTGAAAAATATCGATCAACACATCTGGTTTTCAACGATGATATTCAGGGAACTGCATCAGTTGTTCTTGCTGGTTTAGTTGCAGCTTTGAAATTGGTTGGTGGAAACTTAGCTGACCACAGATTCTTGTTCCTCGGTGCCGGAGAGGCGGGCACCGGAATCGCAGAACTCATTGCTCTTGAAATATCGAAACAGACAAATGGTCCGTTGGAGGAAATACGCAAGAATATTTGGTTGGTCGATTCGAAGGGATTGATTGTTAAATCCCGTAAAGAATCACTCCAACATTTCAAGAAGCCGTGGGCTCATGAACACGAACCAGTTACAAGCCTTCTTGATGCTGTTAATAAAATTAAGCCAACAGTGCTTATCGGAACATCGGGCCAAGGAAAAACTTTTACCAAAGAGGTGGTTGAGGCAATGGCTTCTCTTAACGAGAAACCGATTATTCTGGCTCTTTCCAACCCAACATCACAATCAGAATGTACAGCAGAAGAAGCTTACTTGTGGAGCAGGGGTCGCGCGATTTTTGCAAGTGGGAGCCCATTTCCGCCAGTCGAATATAAGGGCAAAGTGTTCGTGCCTGGCCAGTCGAATAATGCATACATATTCCCTGGGTTTGGCCTAGGTTTAATAATGTCTGGTACCATTCGCGTGCACGACGATCTTCTTCTGGCTGCATCTGAGGCATTGGCTGAACAAGTAACAGAAGAAAACTTTGAGAAGGGTCTGATATTTCCACCATTCACAAACATCAGAAAGATTTCAGCTCACATTGCTGCCAAAGTTGCTGCTAAGGCTTATGAGCTTGGTTTGGCGACTCGTCTTCCTCAGCCGAAAGATTTGGAGAAGTTTGCTGAGAGTTGTATGTATACTCCGGCTTACAGAACCTACCGGTGA 1920 0.4464 MISSTRCNFLGNTGLGGCGNICGGQRRGYGPWRVSCMSPINDRNGSVVMETPLKEIKSEPVVEDVDNNPISGGGPRDVYGEDKATEDHSVTPWSVSVASGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPTTIPQETQVKKMIQHIRQYQVPLQQYTAMMDLQERNERLFYKLLIEHVEELLPIVYTPTVGEACQKYGDIFMRPQGLYISLNEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKRRRATGQEYSELIHEFMTAVKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALEISKQTNGPLEEIRKNIWLVDSKGLIVKSRKESLQHFKKPWAHEHEPVTSLLDAVNKIKPTVLIGTSGQGKTFTKEVVEAMASLNEKPIILALSNPTSQSECTAEEAYLWSRGRAIFASGSPFPPVEYKGKVFVPGQSNNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAEQVTEENFEKGLIFPPFTNIRKISAHIAAKVAAKAYELGLATRLPQPKDLEKFAESCMYTPAYRTYR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00233 639 Pfam Malic enzyme, N-terminal domain 164 345 IPR012301 GO:0004471
Vifa5g00233 639 Gene3D - 98 352 IPR037062 GO:0004471
Vifa5g00233 639 ProSitePatterns Malic enzymes signature. 351 367 IPR015884 GO:0004471
Vifa5g00233 639 SMART Malic_M_2 355 608 IPR012302 GO:0051287
Vifa5g00233 639 PANTHER MALIC ENZYME-RELATED 70 638 - -
Vifa5g00233 639 FunFam Malic enzyme 353 639 - -
Vifa5g00233 639 CDD NAD_bind_1_malic_enz 355 633 - -
Vifa5g00233 639 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Vifa5g00233 639 Pfam Malic enzyme, NAD binding domain 355 607 IPR012302 GO:0051287
Vifa5g00233 639 PIRSF ME 74 639 IPR001891 GO:0004470|GO:0004471
Vifa5g00233 639 SMART malic_2 164 345 IPR012301 GO:0004471
Vifa5g00233 639 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 83 354 IPR046346 -
Vifa5g00233 639 Gene3D - 353 639 - -
Vifa5g00233 639 PRINTS Malic enzyme signature 170 194 IPR001891 GO:0004470|GO:0004471
Vifa5g00233 639 PRINTS Malic enzyme signature 230 259 IPR001891 GO:0004470|GO:0004471
Vifa5g00233 639 PRINTS Malic enzyme signature 266 288 IPR001891 GO:0004470|GO:0004471
Vifa5g00233 639 PRINTS Malic enzyme signature 382 398 IPR001891 GO:0004470|GO:0004471
Vifa5g00233 639 PRINTS Malic enzyme signature 351 367 IPR001891 GO:0004470|GO:0004471
Vifa5g00233 639 PRINTS Malic enzyme signature 326 344 IPR001891 GO:0004470|GO:0004471
Vifa5g00233 639 PRINTS Malic enzyme signature 485 501 IPR001891 GO:0004470|GO:0004471
Vifa5g00233 639 FunFam Malic enzyme 98 352 - -
Vifa5g00233 639 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 355 638 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00233 Vifa-Chr5 31675565 31679664 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00233 K00029 - gmx:100791514 1094.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03856 6 1275600197 1275604152 Vifa5g00233 5 31675565 31679664 ECH
Vifa2g04268 2 1253906347 1253909717 Vifa5g00233 5 31675565 31679664 ECH
Vifa5g00233 5 31675565 31679664 Vifa5g00233 5 31675565 31679664 ECH
Vifa5g00233 5 31675565 31679664 Vifa2g04268 2 1253906347 1253909717 ECH