Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04268 ATGGCTTACGACAACGGTTCTGTCGGTGGTGGTGTTAAGGATCTCTATGGTGAAGATAGTGCTACAGAAGATCAACTTATCACTCCATGGAGTTTCTCTGTTGCTAGTGGAAGCACTTTGCTCAGAGATCCACGTTACAATAAAGGTCTTGCCTTCACTGAGAAAGAAAGAGATGCTCATTATGTTCGTGGCCTTTTGCCTCCTGCTGTTTTCACTCAAGATCTTCAGGAAAAGAGATTAATGCATAATCTTCGCCAATATGATGTTCCTCTTCATAGATATATAGCCTTGATGGACCTTCAGGAGAGGAATGAGAGGCTGTTTTACAAGGTTCTTATCGAAAATGTCGAGGAATTGTTACCTGTTGTTTACACTCCAACTGTTGGTGAAGCTTGTCAGAAATATGGAAGCATTTTTAGGAGGCCTCAGGGTTTATATATCAGTTTGAAGGAGAAAGGTAAGATCCTTGAGGTTCTTAAGAACTGGCCGGAGAAAACGATTCAAGTCATTGTTGTGACCGATGGGGAACGTATATTAGGACTAGGAGATCTTGGTTGCCAGGGAATGGGAATTCCTGTTGGGAAGCTTTCTCTATATACTGCATTAGGAGGTGTTCGTCCTTCATCGTGCTTGCCTATAACGATTGATGTTGGCACAAACAATGAGAAATTGCTGAATGACGAGTTTTACATTGGACTTAGACAGAAGCGAGCAACTGGGAAGGAATATGCGGAGCTTTTAGACGAGTTTATGCATGCAGTTAAGCAGAACTACGGAGAGAAAATTCTTGTGCAGTTTGAAGATTTCGCCAATCATAATGCATTCAATCTTCTGGATAAATATAGCTCGTCGCATCTTGTTTTCAATGATGACATACAGGGTACAGCTTCTGTGGTATTAGCAGGATTGCTCGCTTCCCTTAAGTTAATCGGAGGAACCTTAGCTGACCAAACATTCTTATTCCTCGGAGCTGGCGAGGCTGGAACTGGTATAGCAGAGTTGATAGCTCTTGAGATTTCAAAGCAGACGAAAGCCCCGGTTGAAGAGACTCGCAAGAAGATCTGGCTTGTGGACTCCAAGGGTCTTATTGTTAGCTCTCGTCTGCAATCTCTTCAGCACTTCAAAAAGTCTTGGGCGCATGAGCATGAGCCGGTGAAGGAGCTTCTAGATGCTGTCAAGGCAATCAAGCCGACGGTATTGATTGGATCATCTGGAGTAGGAAAGACATTTACCAAGGAGGTTGTTGAAATCATGGCATCCTTGAATAAGAAACCTCTCATTCTTGCACTCTCCAACCCGACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTATACATGGAGCAAGGGTAAAGCAATTTTTGCTAGTGGAAGTCCATTCGATCACGTTGAGTATGAAGGAAAAGTTTTTGTTCCTGGACAGGCCAACAATGCTTACATCTTTCCTGGCTTTGGTTTGGGTTTGATCATTTCTGGTGCAATCCGTGTGCGTGACGAGATGCTCTTGGCAGCCTCTGAAGCTTTGGCTGCACAGGTATCACAGGAGAACTATGATAAGGGCCTGATTTACCCTCCATTCACAAATATCAGAAAGATATCAGCCAACATTGCGGCTAGTGTTGCAGCTAAGACATATGAACTTGGTCTAGCTTCTCATTTACCTCAACCAAAGGATCTTGTCAAATACGCAGAAAGTTGCATGTATAGCCCAAGCTATCGAAGCTACCGTTAA 1731 0.435 MAYDNGSVGGGVKDLYGEDSATEDQLITPWSFSVASGSTLLRDPRYNKGLAFTEKERDAHYVRGLLPPAVFTQDLQEKRLMHNLRQYDVPLHRYIALMDLQERNERLFYKVLIENVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKTIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQKRATGKEYAELLDEFMHAVKQNYGEKILVQFEDFANHNAFNLLDKYSSSHLVFNDDIQGTASVVLAGLLASLKLIGGTLADQTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIWLVDSKGLIVSSRLQSLQHFKKSWAHEHEPVKELLDAVKAIKPTVLIGSSGVGKTFTKEVVEIMASLNKKPLILALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDHVEYEGKVFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSQENYDKGLIYPPFTNIRKISANIAASVAAKTYELGLASHLPQPKDLVKYAESCMYSPSYRSYR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04268 576 FunFam Malic enzyme 290 576 - -
Vifa2g04268 576 ProSitePatterns Malic enzymes signature. 288 304 IPR015884 GO:0004471
Vifa2g04268 576 SMART malic_2 101 282 IPR012301 GO:0004471
Vifa2g04268 576 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 292 575 IPR036291 -
Vifa2g04268 576 Gene3D - 35 289 IPR037062 GO:0004471
Vifa2g04268 576 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 19 291 IPR046346 -
Vifa2g04268 576 FunFam Malic enzyme 35 289 - -
Vifa2g04268 576 Pfam Malic enzyme, N-terminal domain 101 281 IPR012301 GO:0004471
Vifa2g04268 576 PIRSF ME 13 576 IPR001891 GO:0004470|GO:0004471
Vifa2g04268 576 Pfam Malic enzyme, NAD binding domain 292 543 IPR012302 GO:0051287
Vifa2g04268 576 SMART Malic_M_2 292 545 IPR012302 GO:0051287
Vifa2g04268 576 PANTHER MALIC ENZYME-RELATED 10 575 - -
Vifa2g04268 576 CDD NAD_bind_1_malic_enz 292 570 - -
Vifa2g04268 576 Gene3D - 290 576 - -
Vifa2g04268 576 PRINTS Malic enzyme signature 203 225 IPR001891 GO:0004470|GO:0004471
Vifa2g04268 576 PRINTS Malic enzyme signature 107 131 IPR001891 GO:0004470|GO:0004471
Vifa2g04268 576 PRINTS Malic enzyme signature 288 304 IPR001891 GO:0004470|GO:0004471
Vifa2g04268 576 PRINTS Malic enzyme signature 167 196 IPR001891 GO:0004470|GO:0004471
Vifa2g04268 576 PRINTS Malic enzyme signature 422 438 IPR001891 GO:0004470|GO:0004471
Vifa2g04268 576 PRINTS Malic enzyme signature 263 281 IPR001891 GO:0004470|GO:0004471
Vifa2g04268 576 PRINTS Malic enzyme signature 319 335 IPR001891 GO:0004470|GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04268 Vifa-Chr2 1253906347 1253909717 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04268 K00029 - gmx:100801564 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04268 2 1253906347 1253909717 Vifa2g04268 2 1253906347 1253909717 ECH
Vifa2g04268 2 1253906347 1253909717 Vifa5g00233 5 31675565 31679664 ECH
Vifa6g03856 6 1275600197 1275604152 Vifa2g04268 2 1253906347 1253909717 ECH
Vifa5g00233 5 31675565 31679664 Vifa2g04268 2 1253906347 1253909717 ECH