Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03391 ATGGATAATCACAAGGGAAAGAGTATCAGTTTTGAGCCATTCGTTTGGAAAATTGAAAAATTTTCGAAACAAAACACCAAGAATCTTCGATCCAAGTCTTTCCGAATAGGAGGTTATAAATGGAGAATTCTGTTGCATCCATTAAGGAAAAATGTGGAACATTTTTCATTATATTTGATGGTTGCGGATTCTTTACCAGCCTATGGATGGAGCAGAAAAGCACATTTCAAATTGGTTCTTGTTAATCAAATAGATGACAACAAGTCGATTGTAAAAGAGACTCATCAGAAGTTCAACGGCGGATTCCGTAGTTGGGGCTCATTCTTTCTGAATCTAAGTGATTTCCATGACACAAAACAAGGCTATCTTGTGAACAACACATGCATCATTGAAGCTCATATCAATGTTCAAGCTTCATCACAAATAGAATCCTCAAAACAAGAACAAGGTGTTATAGAAACATCAGATGAAAGTAGTACAACAGAATCATTTGACTCCAATGAAACAGGAACACCAGATTTGACACTAAGGGACCTCTTAGATTTGGAGAGTTTAGGCAATGAAGAAGCAAGTTATGTTCCATTGTTAGAGGAAGCATGTGTTTGGCATCCATCTTTGATAAGAAGCCAAAGTAAAAGAACTCAAAGATTCAAATCATGGGCGTTCTCATCTTTAGGTCAAGTTTTGCATATATTAAAGACAAGTAAAGTGAAGGATATGAATGAAGAAGTGAGTGATAACCTTAGAGGTTTATGGGAGGAACTTGTTATGGCTTCTGGATTTAACTTGGATTGGTTGGAACCTTATGTTGAATCTGCATTGAGTATGAGGAAACATTTGGAAAGGACACTAAAAGTGAATGAATTGAAAGGAAGAATTAATGATTTGGAGAATAAAATGAGGAAACTTAGAGGAGAATTGGCTGAGGCAAAAGTTGAGAGTGAGGAGGCAAAGAAAGTCTTGAATGAGTTAAGCAATGGTTACATAGAGATTGATTTGAATGCTGATTTATCTTACAATGTTTTTTAG 1029 0.3576 MDNHKGKSISFEPFVWKIEKFSKQNTKNLRSKSFRIGGYKWRILLHPLRKNVEHFSLYLMVADSLPAYGWSRKAHFKLVLVNQIDDNKSIVKETHQKFNGGFRSWGSFFLNLSDFHDTKQGYLVNNTCIIEAHINVQASSQIESSKQEQGVIETSDESSTTESFDSNETGTPDLTLRDLLDLESLGNEEASYVPLLEEACVWHPSLIRSQSKRTQRFKSWAFSSLGQVLHILKTSKVKDMNEEVSDNLRGLWEELVMASGFNLDWLEPYVESALSMRKHLERTLKVNELKGRINDLENKMRKLRGELAEAKVESEEAKKVLNELSNGYIEIDLNADLSYNVF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03391 342 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 13 323 - -
Vifa5g03391 342 SMART math_3 13 115 IPR002083 GO:0005515
Vifa5g03391 342 ProSiteProfiles MATH/TRAF domain profile. 11 134 IPR002083 GO:0005515
Vifa5g03391 342 Coils Coil 286 327 - -
Vifa5g03391 342 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 11 154 IPR008974 GO:0005515
Vifa5g03391 342 CDD MATH 14 134 IPR002083 GO:0005515
Vifa5g03391 342 SUPERFAMILY TRAF domain-like 14 137 - -
Vifa5g03391 342 MobiDBLite consensus disorder prediction 145 170 - -
Vifa5g03391 342 Pfam MATH domain 18 136 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03391 Vifa-Chr5 1116862477 1116864039 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03391 - - tpra:123890261 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03391 5 1116862477 1116864039 Vifa5g03391 5 1116862477 1116864039 ECH
Vifa5g03391 5 1116862477 1116864039 Vifa1g02671 1 419819596 419843461 ECH
Vifa3g00099 3 8743171 8746000 Vifa5g03391 5 1116862477 1116864039 PCT