Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02671 ATGACCGTGATGACTCCTGCTCCCATTGATCAACAGCAGCAGGAGGATGAGGAGATGCTTGTCCCGCACACTGTTCCACATGCTGATTTGGCTGAGAATAACCATGAACCTATGGATGTTGTTGCTCAACCTGAAATTGCCAACCCTGTGGAGCCTGCTGAGGATCCTACACCAACAAGATTCGCATGGAAAATTGACAACTTTTCTAGGATGAACACGAAAAAGCTCTATTCAGATGTATTTGTTGTTGGGAGTTTCAAATGGCGTGTACTTATTTTCCCAAAAGGGAACAATGTCGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAACTAGTTTGCCCTACGGTTGGAGTAGATATGCACAGTTTAGCTTGACAGTTGCTAATCAAATCCATACTAAGTACTCTGTGAGAAAAGACACGCAGCATCAGTTCAATGCACGAGAAAGTGATTGGGGTTTCACATCCTTCATGCCTCTCGGTGAATTGTATGATCCTAGTAGAGGGTATCTCATGAATGATACTCTTCTAATTGAAGCTGAGGTCATTGTCCGTAGGATTGTTGATTACTGGACTTACGATTCAAAAAAGGAGACGGGATATGTTGGGCTCAAGAACCAGGGAGCTACATGTTATATGAATTCTCTGCTCCAAACTTTGTATCATATTCCTTATTTCCGAAAGGCTGTATACCATATGCCTACAACAGAGAATGATATGCCCTCTGGAAGCATCCCCTTGGCTCTGCAAAGTTTGTTTTACAAGCTCCAGTACAGTGACACCAGTGTCGCAACAAAAGAGCTGACAAAATCGTTTGGATGGGATACTTACGATTCGTTCTTGCAGCATGATGTTCAAGAATTAAATAGAGTTCTTTGTGAAAAACTTGAAGACAAAATGAAGGCAACTGTTGTTGAGGGAACTATACAGAAATTGTTTGAAGGGCACCACATGAACTATATCGAGTGCATCAATGTGGACTATAAATCAACACGAAAGGAGTCATTTTATGATCTTCAACTTGATGTCAAAGGTTGTCCTGATGTTTATGCTTCATTTGACAAGTATGTTGAAGTTGAACGTCTTGAGGGGGACAACAAATACCATGCTGAACAAAATGGTTTGCAGGATGCTAAGAAAGGTGTTCTGTTCATCGATTTTCCTCCAGTTTTGCAGCTTCAGCTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTAAAGATTAATGATCGTTATGAGTTTCCATTGCAACTTGATCTTGATCGAGACAATCGAAAATATTTATCACCTGATGCTGATAGGAACGTTCGCAATCTTTACACACTTCATAGTGTTCTGGTTCACAGTGGTGGTGTGCACGGTGGACATTACTATGCTTTTATCAGACCCACTCTCTCTGATCAGTGGTACAAATTCGATGACGAGAGGGTGACAAAAGAAGACCCTAAACGGGCATTAGAGGAGCAATATGGTGGTGAGGAAGAGTTACCACAGACAAATCCTGGATTCAATAACAGTCCTTTTAAATTCACCAAATATTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAGGAAAAAGTTGTATGCAATGTGGACGAGAAAGACATTGCTGAGCATTTAAGGGAGAGGTTGAAAAAAGAACAGGAAGAAAAAGAGCACAAAAAGAAAGAAAAGGCTGAGGCTCACCTTTACACTATCATAAAGGTGGCACGAGATGAAGACCTCGGAGAACAGATTGGAAAGGATATATATTTTGATCTTGTAGACCATGACAAAGTGCGGAGTTTCCGTGTCCAAAAGCAGACACCATTTAACGTTTTCAAGGAAGAGGTTGCTAAAGAGTTTGGCATACCTGTCCAATTCCAGCGCTTTTGGCTATGGGCAAAGCGTCAAAACCATACATATCGTCCTAATCGTCCATTCACACACATTGAGGAAGCACAATCTGTTGGACAATTGAGGGAAATATCGAACAAGGTTCACAATGCAGAATTAAAATTGTTTTTGGAAGTGGAACATGGGCCGGATTTATGTCCCATTGCACCACCTGAGAAGACAAAGGATGATATATTGCTTTTTTTCAAGTTATATGATCCTGAAAAAGAGGAACTGCGTTATGTTGGCAGACTCTTTGTGAATAGTACTGGCAAGCCATCAGAAATCTTAACAAGGTTAAATAAAATGGCTGGTTATGATCCTGATGAAGAGATTGGACTTTATGAGGAAATTAAGTTTGAACCAAATGTAATGTGTGAGCCTATTGACCAGAAATTAACATTTCGAGCAAGCCAGCTTGAAGATGGAGATATTATATGCTTTCAGAAAGTTATTGCTATAGATAATGAGGAACATATCCGCTATCCTGACGTGCCTTCTTACTTAGAATATGTGCATAATCGCCAGGTTGTTCACTTTCGGTCTCTAGATAAACCAAAGGATGATGACTTCTCCCTGGAGATGTCAAGACTTTTTACATATGATGACGTTGTGGAGAGAGTAGCAGAACAACTTAGTTTGAATGACCCATCTAAAATCAGGCTCACCCCACACAACTGCTACTCTCAACAACCTAAACCCCAGCCTATCAAGTACCGAGGGGTGGACCATTTATCTGATATGCTGGTTCACTACAATCAGACATCGGATATATTGTACTATGAAGTACTTGACATCCCTCTGCCAGAATTACAAGGTCTGAAAACTCTGAAAGTTGCATTTCATCAAGCTACCTTGGATGAAGTCGTTATACATACCATCAGACTCCCAAAGCAGAGCACTGTGGGAGATGTCCTTGATGATCTTAAAACAAAGGTTGAATTGTCTCGTCCTGATGCTGAGCTTAGGTTGCTTGAAGTCTTCTATCACAAAATATACAAGGTTTTCCCTCCCAATGAAAAGATTGAAAACATAAACGATCAATACTGGACACTACGAGCAGAGGAGATTCCAGAAGAAGAGAAAAATCTTGGTCCTCTTGATCGTCTAATCCATGTGTATCATTTTACTAAAGACACAACTCAGAACCAAATGCAAATTCAAAACTTTGGGGAACCCTTCTTCTTGGTCATACACGAATGTGAGACTTTGGCCGAAATTAGAGTGCGAATACAGAAGAAGCTTCAAGTTCCTGATGATGAGTTTGTCAAGTGGAAGTTTGCCTTTTTTTCATTAGGGCGACCAGAGTACCTCGAGGACTCTGACGTTGTATCAAGTCGCTTTCAGAGAAGAGACGTATATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACTGATAATGCTCCTAAAAGATCATATGCTGCTAACCAGAGTCGTCACACGTATGAGAAGCCAGTAAAGATTTATAATTAG 3369 0.4058 MTVMTPAPIDQQQQEDEEMLVPHTVPHADLAENNHEPMDVVAQPEIANPVEPAEDPTPTRFAWKIDNFSRMNTKKLYSDVFVVGSFKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGWSRYAQFSLTVANQIHTKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLMNDTLLIEAEVIVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFLQHDVQELNRVLCEKLEDKMKATVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNKYHAEQNGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDNRKYLSPDADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNSPFKFTKYSNAYMLVYIREADKEKVVCNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLGEQIGKDIYFDLVDHDKVRSFRVQKQTPFNVFKEEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPFTHIEEAQSVGQLREISNKVHNAELKLFLEVEHGPDLCPIAPPEKTKDDILLFFKLYDPEKEELRYVGRLFVNSTGKPSEILTRLNKMAGYDPDEEIGLYEEIKFEPNVMCEPIDQKLTFRASQLEDGDIICFQKVIAIDNEEHIRYPDVPSYLEYVHNRQVVHFRSLDKPKDDDFSLEMSRLFTYDDVVERVAEQLSLNDPSKIRLTPHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHQATLDEVVIHTIRLPKQSTVGDVLDDLKTKVELSRPDAELRLLEVFYHKIYKVFPPNEKIENINDQYWTLRAEEIPEEEKNLGPLDRLIHVYHFTKDTTQNQMQIQNFGEPFFLVIHECETLAEIRVRIQKKLQVPDDEFVKWKFAFFSLGRPEYLEDSDVVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAANQSRHTYEKPVKIYN 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02671 1122 ProSiteProfiles MATH/TRAF domain profile. 58 183 IPR002083 GO:0005515
Vifa1g02671 1122 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 443 460 IPR018200 GO:0004843|GO:0006511
Vifa1g02671 1122 FunFam Ubiquitin carboxyl-terminal hydrolase 13 56 199 - -
Vifa1g02671 1122 SMART math_3 60 164 IPR002083 GO:0005515
Vifa1g02671 1122 FunFam Ubiquitin carboxyl-terminal hydrolase 13 688 805 - -
Vifa1g02671 1122 MobiDBLite consensus disorder prediction 484 506 - -
Vifa1g02671 1122 FunFam Ubiquitin carboxyl-terminal hydrolase 13 806 903 - -
Vifa1g02671 1122 Pfam MATH domain 65 183 IPR002083 GO:0005515
Vifa1g02671 1122 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 57 199 IPR008974 GO:0005515
Vifa1g02671 1122 FunFam Ubiquitin carboxyl-terminal hydrolase 13 200 528 - -
Vifa1g02671 1122 SUPERFAMILY TRAF domain-like 56 188 - -
Vifa1g02671 1122 SUPERFAMILY Cysteine proteinases 198 555 IPR038765 -
Vifa1g02671 1122 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 203 527 IPR028889 -
Vifa1g02671 1122 Coils Coil 536 567 - -
Vifa1g02671 1122 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 628 880 IPR024729 -
Vifa1g02671 1122 Gene3D - 806 903 - -
Vifa1g02671 1122 Pfam Ubiquitin-specific protease C-terminal 890 1100 IPR029346 -
Vifa1g02671 1122 CDD peptidase_C19C 201 527 - -
Vifa1g02671 1122 CDD MATH 60 183 IPR002083 GO:0005515
Vifa1g02671 1122 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 204 219 IPR018200 GO:0004843|GO:0006511
Vifa1g02671 1122 Gene3D Cysteine proteinases 200 528 - -
Vifa1g02671 1122 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 66 529 - -
Vifa1g02671 1122 Pfam Ubiquitin carboxyl-terminal hydrolase 203 524 IPR001394 GO:0004843|GO:0016579
Vifa1g02671 1122 Gene3D - 688 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02671 Vifa-Chr1 419819596 419843461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02671 310 482 Miscellaneous Gene Families AT2G24640 26.966 9.46e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02671 K11838 - gmx:100800328 2093.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02671 1 419819596 419843461 Vifa1g02671 1 419819596 419843461 ECH
Vifa5g03391 5 1116862477 1116864039 Vifa1g02671 1 419819596 419843461 ECH
Vifa1g02671 1 419819596 419843461 Vifa1g02672 1 419819596 419843461 PCT