Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00099 ATGGACGATTACACGAGAGAGATGATGGACCTCAAAACCCTCGTGACTCGCACTCTCGAGAAGAAAGGCGTTCTCGCTAGGATCCGAGCTGAATTAAGAGCTAGTGTCTTTGAAGCTATCGAAGAAGAAGATCGTGTCATCGAAAAGGATCAAGCTCTGCCTCCTGCATTGTTAGGTAGCTGTAACGATCGTGCTAAACAGCTTCACGCTTCTCCTTCTGGTAGACTTCTTACTGCACTGGTATGTGAATACCTTGACTGGGCACAGCTTACTCACTCGCTAAAAGTTTATCTTCCAGAATGTAATTTGGAGAAAGATTTTTGGAAGTCTGAGTTGAAAGAGTTTAGTAGCAAAAATGGATATGATCTTAATAGAAATGGAGACAGCCCCGTGCTCTTGGATGTGCTTGAAGGATTCTTGAAATTTGAGAACTTATCCCAAGCAAGGGCTAGTGGTAGGAGGTTTACTACTTCAGAAACTGAGCCTTTGCCAAACTCAGAATCACGGAACACGCGAAGGCATTCTTCATCATCTGTTGCTGGTGGCTTACCTCCACTAGGAAGGGCTGTTCCTTCATCTCAAGCATCCGATAGAAGAGGAGGATCCTCTGGGTCTGGATACAGGAAGGATGAGTACAATTGGCGATATGACAATGAAGAACTTCCCGAAGATGTAATTCAAGCATCAAATGCTTTGGAAAATCTTCAACTGGACAGAAAAGCTAGGAATCTAACATCATCTTGGCGACACGCTGCTGATGAAACCAGCGAGGACGACAGCAGGTCTGACCATGCTTAG 798 0.4486 MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVIEKDQALPPALLGSCNDRAKQLHASPSGRLLTALVCEYLDWAQLTHSLKVYLPECNLEKDFWKSELKEFSSKNGYDLNRNGDSPVLLDVLEGFLKFENLSQARASGRRFTTSETEPLPNSESRNTRRHSSSSVAGGLPPLGRAVPSSQASDRRGGSSGSGYRKDEYNWRYDNEELPEDVIQASNALENLQLDRKARNLTSSWRHAADETSEDDSRSDHA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00099 265 MobiDBLite consensus disorder prediction 151 178 - -
Vifa3g00099 265 ProSiteProfiles LIS1 homology (LisH) motif profile. 73 105 IPR006594 GO:0005515
Vifa3g00099 265 MobiDBLite consensus disorder prediction 243 265 - -
Vifa3g00099 265 MobiDBLite consensus disorder prediction 151 212 - -
Vifa3g00099 265 PANTHER FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN 8 173 - -
Vifa3g00099 265 Gene3D - 59 138 - -
Vifa3g00099 265 Pfam LisH 77 103 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00099 Vifa-Chr3 8743171 8746000 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00099 K16546 - gmx:100784351 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00099 3 8743171 8746000 Vifa5g03391 5 1116862477 1116864039 PCT