Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03077 ATGCATCGCCAAAACCTCTTTCCGATTTCAATACTACTAGTAATATCAATAACCATTCTATTTTATTCAACATTAACAAGTGCTCTTGAAGAACCTGAGTACGGTTACAATGAAGAAAGTGCAGATGGACCAAAACATTGGGGTGATCTAAAAAGAGAATGGGCAGCATGTAAAGGAGACATGCAATCTCCTATTGATTTGTCAAGTCAAAGAGTGACTCTCATCCCAAATTTGGGAAGGCTAACGAGTTACTATAAGCCTCAATATGCCACCGTATCCAACCGGGGTCACGATGTTGCGATCACTTGGAAAGGAGATGCCGGCTCAATAAACATCAATGGAAATGATTATTTTCTTCAACAAAGCCATTGGCACTGGCCATCTGAACATACCATCAATGGCAGGAGGTTTGACTTAGAGTTGCATATGGTTCATGTTAGCCCTCAGCCTGATGGAACAAACAAGACAGCCGTTGTTGGTATTTTGTATAAATATGGTACCCCAGATCCATTTCTTTCTGAGCTCGTAAAGTATATAGTCGAAGTTCCTGATGAAGATGAAGAAGCAAGCATAGGTGTTATTGATCCATCAAAAATATTCAAGGATTCAAACGTGTATTACAGATATATGGGATCACTAACTGCACCTCCTTGCACTGAAGGTATCATTTGGACCATTAAGACCAAGATAAGAACTGTTTCAAGAGGACAAGTCAAGTTACTGGAGAATTCCGTACTTAAATATTATGCAAAAAAGAATGCAAGGCCAGTGCAGAATCTGAATCAGCGAGAGATTGGAGTTTATGATTCAATAATGGCAGAGAATATACCTCACTATTGA 840 0.3929 MHRQNLFPISILLVISITILFYSTLTSALEEPEYGYNEESADGPKHWGDLKREWAACKGDMQSPIDLSSQRVTLIPNLGRLTSYYKPQYATVSNRGHDVAITWKGDAGSININGNDYFLQQSHWHWPSEHTINGRRFDLELHMVHVSPQPDGTNKTAVVGILYKYGTPDPFLSELVKYIVEVPDEDEEASIGVIDPSKIFKDSNVYYRYMGSLTAPPCTEGIIWTIKTKIRTVSRGQVKLLENSVLKYYAKKNARPVQNLNQREIGVYDSIMAENIPHY 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03077 279 PANTHER CARBONIC ANHYDRASE 32 263 IPR023561 GO:0004089|GO:0008270
Vifa5g03077 279 SUPERFAMILY Carbonic anhydrase 32 266 IPR036398 -
Vifa5g03077 279 Pfam Eukaryotic-type carbonic anhydrase 43 265 IPR001148 -
Vifa5g03077 279 ProSiteProfiles Alpha-carbonic anhydrases profile. 32 269 IPR001148 -
Vifa5g03077 279 ProSitePatterns Alpha-carbonic anhydrases signature. 128 144 IPR018338 GO:0004089|GO:0008270
Vifa5g03077 279 SMART Carb_anhydrase_2a 36 266 IPR001148 -
Vifa5g03077 279 CDD alpha_CA_prokaryotic_like 43 265 IPR041891 -
Vifa5g03077 279 Gene3D Alpha carbonic anhydrase 31 275 IPR036398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03077 Vifa-Chr5 1015611789 1015613319 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03077 K01674 - gmx:100799362 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03077 5 1015611789 1015613319 Vifa3g00903 3 223967073 224003097 PCT
Vifa3g00905 3 224493039 224496642 Vifa5g03077 5 1015611789 1015613319 PCT