Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00905 ATGAAAAACCAAAAAATACTCTCAAAGTTCCTTTCAAATCTTCTAATACTACTAACTATCCTTCTCATTTCAACAAAATGGACCATAGCACAAGAAGTTGAGGATGAGAGTGAATTTGATTACATAGAAGGGAGCGAAAAAGGTCCTTCACGTTGGGGAGAATTGCATAAGGAATGGGCAGCATGTAAAAATGGAAGAATGCAATCTCCAATTGATTTGTCAAATCACAGAGTGAGGATAGTTTCAAAGTTAGGAAAACTAAAGAAGAATTATAAACCTCAAAATGCTACTATCAAAAATAGAGGTCATGATATTCAGGTGAAATGGGAGGGAGATGCAGGTTCAATTAATATTAATGGGACCGATTATTTTCTACATCAAGCCCACTGGCATTCACCTTCTGAACATACCATCAATGGCAGAAGGTATGATGTGGAGCTACACTTGGTACACGAAAGTCAAAAAATAAATGGGAAAAGCAAGATTGCTGTTATTGGGATCCTATATAAATTTGGTCGACCAGATTCTATTCTCATTAAGTTGTCAAAATACATTAAAGCCTTGGTGGATACTGAAGCAGAAATGAGTATTGGAGTGATTAATCCCTCCAAAATCAAGTTTGGTGGAAAGAAATATTACAGATACAAGGGCTCTCTCACTGTCCCTCCATGCACTGAAGGTGTCATTTGGACTATCAATAAAAGGATAAGACGTGTTTCTAGAGCACAAGTGAAGTTACTTAGGGAGGCTGTTCATGATCATGCGGAGAAGAATGCTAGACCTTTGCAACTCCTGAATAGAAGAGAGATACAACTCTATGACCCAAAAAAGAAGGAATGA 840 0.3738 MKNQKILSKFLSNLLILLTILLISTKWTIAQEVEDESEFDYIEGSEKGPSRWGELHKEWAACKNGRMQSPIDLSNHRVRIVSKLGKLKKNYKPQNATIKNRGHDIQVKWEGDAGSININGTDYFLHQAHWHSPSEHTINGRRYDVELHLVHESQKINGKSKIAVIGILYKFGRPDSILIKLSKYIKALVDTEAEMSIGVINPSKIKFGGKKYYRYKGSLTVPPCTEGVIWTINKRIRRVSRAQVKLLREAVHDHAEKNARPLQLLNRREIQLYDPKKKE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00905 279 SMART Carb_anhydrase_2a 41 274 IPR001148 -
Vifa3g00905 279 PANTHER CARBONIC ANHYDRASE 36 268 IPR023561 GO:0004089|GO:0008270
Vifa3g00905 279 Pfam Eukaryotic-type carbonic anhydrase 48 271 IPR001148 -
Vifa3g00905 279 Gene3D Alpha carbonic anhydrase 35 279 IPR036398 -
Vifa3g00905 279 ProSiteProfiles Alpha-carbonic anhydrases profile. 37 274 IPR001148 -
Vifa3g00905 279 ProSitePatterns Alpha-carbonic anhydrases signature. 134 150 IPR018338 GO:0004089|GO:0008270
Vifa3g00905 279 CDD alpha_CA_prokaryotic_like 48 272 IPR041891 -
Vifa3g00905 279 SUPERFAMILY Carbonic anhydrase 38 270 IPR036398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00905 Vifa-Chr3 224493039 224496642 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00905 K01674 - gmx:100797935 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00905 3 224493039 224496642 Vifa3g00905 3 224493039 224496642 ECH
Vifa3g00905 3 224493039 224496642 Vifa5g03077 5 1015611789 1015613319 PCT