Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00226 ATGGATAACAATCTACAAGTAGTATCAAAGAGAGTGTGGAAAATGGTACGTGTTGTCTTCTTCATGTTGAGAAAAGGCATATCAAAAGGCAAACTAATGGTAAACCTAAACATGATATTCAAACGCCGTAGCAAGCTCGCCGGAAAAGTTATTGCCAATCTAATGTCCCAGAATCACCACCACGGAGGCTCCACCTCAAACCGCCACTCCCACGACTCACAGCGGCAATTCACTTTCTCAAGGGATTACGAATTCAGCTGTAGCGACACTACCGACAACTTGTTCTCAAACGGGAAGCGTCACCATAAATACAATGTACAAGCGGCACTTGCAGATGATGATGAGGTGACGACTATGAATGCAATGAAGGCAGTAATGGATATGCTTAACAATGATAAAACAATTGCAGAAGCATCTCATGCACTGAAACTGAGTTACTCACCATTCCCTTTAAGATATGACGATGAGAAGGACAATCAAGTTGATAAGGCTGCAGAAGATTTCATAAAAAGGTTTTATAGCCAGCTCAGGAAGCAAGTTTGA 543 0.4199 MDNNLQVVSKRVWKMVRVVFFMLRKGISKGKLMVNLNMIFKRRSKLAGKVIANLMSQNHHHGGSTSNRHSHDSQRQFTFSRDYEFSCSDTTDNLFSNGKRHHKYNVQAALADDDEVTTMNAMKAVMDMLNNDKTIAEASHALKLSYSPFPLRYDDEKDNQVDKAAEDFIKRFYSQLRKQV 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00226 180 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 179 - -
Vifa5g00226 180 Pfam Cotton fibre expressed protein 158 179 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00226 Vifa-Chr5 30403686 30404228 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00226 - - psat:127082582 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01436 4 424388315 424388863 Vifa5g00226 5 30403686 30404228 ECH
Vifa1g06712 1 1041180121 1041180702 Vifa5g00226 5 30403686 30404228 ECH
Vifa5g00226 5 30403686 30404228 Vifa5g00226 5 30403686 30404228 ECH
Vifa5g00226 5 30403686 30404228 Vifa4g01436 4 424388315 424388863 PCT