Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01436 ATGGAAAATAACCTACCAATAATAACAAAGAGAGTATGGAACATGATACGTGTGGCCTTGTTCATGTTAAGAAAAGGCGTATCAAAGGGAAAACTAATGATGGACCTAAACATGATGCTCAAACGCCGCAGCAAACTCGCCGGAAAAGCCATCACCAACCTCATCTTCCCTCACCACCACGGAAACTCCACTTCAAGGGACTACGAATTCAGCTGCAGCAACACCCCAAACTACAAGTTTGTCCTCAACAACAAGCGTCACCGCAACAACCATTTCTTCGCGTGTGCTCACGCTCCTCTCACGCAAGAGGACGACATTGTGACCGTTAATGCAGTTAAGACTATATTGGAGAATATGGTTAATAATCATGAGGTTATGGTCGAGGCTTCCCCGGCGCTCCCCGGGTTCGGGCGGACACCTAAGGCGAGACAGTTGAGGGTAACTGACTCGCCTTTTCCGGTGGACGACACCGATACGGTTGCCGAGGTTGACAAGGCTGCCGATGCTTTTATAAAGAGGTTTTACTTGCAGTTGAAGAAACAGGATTGA 549 0.4791 MENNLPIITKRVWNMIRVALFMLRKGVSKGKLMMDLNMMLKRRSKLAGKAITNLIFPHHHGNSTSRDYEFSCSNTPNYKFVLNNKRHRNNHFFACAHAPLTQEDDIVTVNAVKTILENMVNNHEVMVEASPALPGFGRTPKARQLRVTDSPFPVDDTDTVAEVDKAADAFIKRFYLQLKKQD 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01436 182 Pfam Cotton fibre expressed protein 162 181 IPR008480 -
Vifa4g01436 182 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 4 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01436 Vifa-Chr4 424388315 424388863 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01436 - - psat:127076491 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01436 4 424388315 424388863 Vifa5g00226 5 30403686 30404228 ECH
Vifa1g06712 1 1041180121 1041180702 Vifa4g01436 4 424388315 424388863 ECH
Vifa4g01436 4 424388315 424388863 Vifa4g01436 4 424388315 424388863 ECH
Vifa5g00226 5 30403686 30404228 Vifa4g01436 4 424388315 424388863 PCT