Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06712 ATGGACATTGAAAAGAACCAACAATTGGTAGCAAAAAAACTATGGAAAACACTTCGCATAGTTTTGTTCATGTTAACAAAAGGAATAGCCAAAAGCAAAATGGTAGCAGAATTAAATCTCTTGCTAAAACGCGGCAAAGTAGCCGCCGTTAAAGCCATTGCCAACACTCTCACTCTCCGCCACCATTCCACCGCCGCATCGTTCGTGTCGCCTCACGACTACGAATTCAGTTGCAGCAACAGCCCCGCCGTAGTTAAATTCCACCGGAAAATTAAAAACCACCACCACCCGAACAATTTTTCGACCGTTCAAAAGGTTTTAGAGATTCTCAATGATGTTGATACTTCTTCTTTTTCTTCTCCTTCTCCGTTGGTCACATTTCCTGAATTCGGAAAAAGTCCTATTGGAAATAAAATCAGAATCACGGATTCGCCGTTTCCTTTGAAGGAAGAAGAAGGAGATGATCATAGCCATGTTGATGTTGCAGCTGAAGAGTTTATTAAAAGGTTTTATAGAAATCTCAATTTGCAACAAAAATTGGCAGCGATTCAATCACCTTACAACAACTCCCGCGATAGATAG 582 0.4089 MDIEKNQQLVAKKLWKTLRIVLFMLTKGIAKSKMVAELNLLLKRGKVAAVKAIANTLTLRHHSTAASFVSPHDYEFSCSNSPAVVKFHRKIKNHHHPNNFSTVQKVLEILNDVDTSSFSSPSPLVTFPEFGKSPIGNKIRITDSPFPLKEEEGDDHSHVDVAAEEFIKRFYRNLNLQQKLAAIQSPYNNSRDR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06712 193 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 186 - -
Vifa1g06712 193 Pfam Cotton fibre expressed protein 158 177 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06712 Vifa-Chr1 1041180121 1041180702 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06712 - - gmx:100783043 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06712 1 1041180121 1041180702 Vifa4g01436 4 424388315 424388863 ECH
Vifa1g06712 1 1041180121 1041180702 Vifa5g00226 5 30403686 30404228 ECH
Vifa1g06712 1 1041180121 1041180702 Vifa1g06712 1 1041180121 1041180702 ECH