Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01805 ATGCATAAACTCACGCTCTTTCTCTTTTGTATCATTTTCTCCACATTCACCGTTGGTTTTGCAGATCATGCCGACAAAACACAAAACCCATTCAGTCCAAAAGCATTCGTAATCCGCTATTGGGACAGAGTGATCAAAAACAAGTTACCAAAACCATCATTTATCATCTCCAAGGCGTCACCACTTACCGCCGCCGACGCAACCGCTTTCGCCAAACACATAGCTGACAACACACTGTCCACAAAGTTGCCGGAATTCTGCTCCGCCGCACACCTCCTCTGCTTTCCCGATGTCAATCCCAGCCTTGCAAAACACTCCCAGGACTCCCACTTCGCCGTCTACAACGACGGTCAGAATTTCACAAACTACGGCACAGAAAGACCCGGCGGACTTGACTCCTTCAAGAACTACTCCAACGGCTTCGAAAGCAATGCGATCAACGAATTCCGTCAATACAGCCGCAGTTCCGCCGGCCACAACGACAGTTTCAGCAACTATGCTGATTCAACCAACGTCGCAGATCAGAGTTTCAACACCTACGGTTCCTCCGCCGCTGGTGGCTCCGGCGAATTCAAAGAATACGCTCAAGACACCAACGTCCCTGACCTCAGGTTCACCACTTACTCAGTCTCTACCGCCGGCAGACAACAAACTTTCTCAAGCTACAGCGAAAACGGAAACGCCGGTGATCAGAGTTTCGGTAACTACGGAAAAGACTCCGCCGGTGCCGAAAACAGCTTCAAACAGTACGGAACTAACTCTAATGTTGCATCATCAGGTTTTTCTAGTTACGCAGATAAAGGCACAGAAACTGGAACTCATGTTGGTTTTAATAACTATGGAAAATCATTTAATGAAGGAACTGACACTTTTAAAGGTTATGCTAAAGGTGCTGGTGCTGATCATAAGGTTACTTTCAAAGAATACGGTGTTAATAACACTTTCAAGGATTATGATAAGAAAGGTATTTCTTTTGCTAAATATACTAATGCTTCTTCAACTAATGCTGTTTCGGTTAGTGACAGTTTGGCAAAGAAATGGGTTGAGCCGGGTAAGTTTTTCCGCGAAATGATGTTGAAACAAGGCGTGGTTATGCCTATGCCCGATATTAAGGATAAGTTACCACAGAGATCGTTTTTGCCTCGTAATATTTTTACTAAATTGCCTTTTGCTACTTCCAAGTTGAATGAGTTGAAGCAAGTTTTTAAAGTGTCTGAGAATTCGTCTATGGATAAGATGATAGTGGACTCGTTGAATGAGTGCGAGAGGGCTCCGAGTAAGGGTGAGACTAAGCGATGTGTTGGATCGCTTGAGGACATGATCGACTTTGCAACTTCGGTATTGGGACATGATGTTACCGTTCGATCCACTGAGAATTTGAATGGGTCGGGTAAGAATGTTATGGTGGGTAAGGTTAAAGGGATAAATGGTGGGAAAGTTACTCAATCAGTGTCGTGTCATCAAAGTTTATTTCCATCTTTGTTGTACTACTGTCATTCCGTTCCAAAGGTTCGGGTTTATCAAGCCGAGCTTTTGGACCCGGAATCAAAGGCCAAGATCAATCATGGTGTAGCAATCTGTCACTTGGATACCACTGCTTGGAGTCCCACCCATGGTGCATTCATGGCTCTGGGCTCTGGTCCGGGTCGAATTGAAGTATGCCATTGGATCTTTGAGAACGATATGACTTGGACTACTACAGACTAA 1707 0.4487 MHKLTLFLFCIIFSTFTVGFADHADKTQNPFSPKAFVIRYWDRVIKNKLPKPSFIISKASPLTAADATAFAKHIADNTLSTKLPEFCSAAHLLCFPDVNPSLAKHSQDSHFAVYNDGQNFTNYGTERPGGLDSFKNYSNGFESNAINEFRQYSRSSAGHNDSFSNYADSTNVADQSFNTYGSSAAGGSGEFKEYAQDTNVPDLRFTTYSVSTAGRQQTFSSYSENGNAGDQSFGNYGKDSAGAENSFKQYGTNSNVASSGFSSYADKGTETGTHVGFNNYGKSFNEGTDTFKGYAKGAGADHKVTFKEYGVNNTFKDYDKKGISFAKYTNASSTNAVSVSDSLAKKWVEPGKFFREMMLKQGVVMPMPDIKDKLPQRSFLPRNIFTKLPFATSKLNELKQVFKVSENSSMDKMIVDSLNECERAPSKGETKRCVGSLEDMIDFATSVLGHDVTVRSTENLNGSGKNVMVGKVKGINGGKVTQSVSCHQSLFPSLLYYCHSVPKVRVYQAELLDPESKAKINHGVAICHLDTTAWSPTHGAFMALGSGPGRIEVCHWIFENDMTWTTTD 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01805 568 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 264 568 - -
Vifa4g01805 568 SMART BURP_2 351 567 IPR004873 -
Vifa4g01805 568 Pfam BURP domain 353 565 IPR004873 -
Vifa4g01805 568 ProSiteProfiles BURP domain profile. 353 567 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01805 Vifa-Chr4 511844099 511846114 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01805 - - gmx:100811362 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01805 4 511844099 511846114 Vifa2g02047 2 532340747 532342797 ECH
Vifa4g01805 4 511844099 511846114 Vifa4g01805 4 511844099 511846114 ECH
Vifa1g04668 1 729695507 729697485 Vifa4g01805 4 511844099 511846114 PCT