Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04668 ATGAACAAACAACTCATCCTTATCTGTCTCTTTATCCTCTTCTCATCTATCATTGTAACTATATCCGGCGATGCGGTGGCCGGAGACAAAAACCCGTTCACTCCCAGATCATATGTCAATCGTTATTGGGACAAAGAGATCCGCAACGGCTTACCTAAACCGTCGTTCCTGTTATCCAAGGCGTCACCGCTAAGCACGGTGGAAGCCGCTACGTTCGCCAAGCTAGCCGCTGGGAATAGTCTATCCACGCGCCTGCCGGAGTTTTGCTCCGCTGCAAACCTCCTCTGCATCCCAGAAGTTGCTGCAAGTCTCGAAAAACACGACAAGGACGCAAACTTTGCTGTTTACAGAGACAAGAATTTCACCAACTACGGAACGAGTCGACCCGGTGGAGTGGATTTGTTCAAAAGCTACTCCGACGGGGAAAACATTCCGGTGAACGATTTCCGTCGCTACAGCCGTAACTCCGCAGGCCACAAAGACAGTTTCACCAGCTACGCCACAGAAAGCAACGTGGCTGACCAAAGCTTCCACACATACGGCACCGGAGCCACCGGCGGTAGCGGCGATTTCAAACAGTACACAAAAGAAACCAACAACCCCACCCTCGTTTTCTCTTCTTACTCCGACAACTCCAACGGAAGAACCCAATCCTTCACTTCCTACACCGAAAACGGAAACGCCGGAGATCAATCATTCTCATCCTACGGCAAAAACGGCAATGGCCCCACAGAAGAATTCACCTCGTACGGAACAAGCACCAACGTTGTCGGATCCAGTTTCTCTAACTACGCTGAAACCTCAAACGCCGGCAACGACAGTTTTACAAACTACGGAATAGATATGAATAACCCAACCAACAATTTCAACAACTACGCTAACGAAGGTAACGGCGCAGTTCAAACATTCTCAAACTACCGTGAAAAAGCCAACGTCGGTGCAGACACTTTCACCAGCTACGCCAAAACAGCAAACGCCGCTAAAGTTGATTTCAACAACTACGGTAAATCGTTCAACGACGGAACCGACACATTTACAAGCTACGCTAAAACATCAACCGGCGAGACAAAAGTTAACTTCAAAGGCTACGGTGTTAAAAACAGTTTCAAAGAGTATACAAAAGACGGTGTTTCTTTTGCAAAGTATACAAACGTGAGTTCAACGGTGGAAGAGAGAAAAAACACGGTGAGTGGCAATTTGGTAAAAAAATGGGTTGAGCCGGGTAAATTCTTTAGAGAGAAAATGTTGAAAGAGGGTACAGTGATGCCTATGCCAGATATTAGCGATAAATTACCTAAAAGGTCGTTTTTACCCCGGAGTATACTCTCGAAATTACCGTTTTCTACCTCGAAAATCTCTGAAATGAAAGAGCTATTCAAAGCTTCGGATAATGGTTCAATGGAGAAAATGATGAGAGATTCATTGGGAGAGTGTGAGAGAGTTCCAAGCCGCGGTGAAACGAAACGGTGTGTTGGGTCCATTGAGGACATGATCGACTTTGCAACTTCGGTTCTCGGTCGAAACGTTGTCGTTCGGACTACTCAGAATTTAAACGGGTCGAAGAAGAGTGTTATGGTGGGTCGGGTTAGTGGTATCAACGGTGGGAAAATTACCCGTTCCGTTTCTTGTCATCAGAGTTTGTTTCCTTCTTTGCTTTATTATTGTCACTCTGTTCCTATGGTTCGGGTTTACCAAGCGGATCTACTTGACCCGAAAAGTAAGGATAAGATTAATCAAGGTGTTGCGGTTTGCCACTTAGATACTTCGGATTGGAGTTCCACTCATGGAGCTTTTATGTCTCTCGGGTCGGGTCCGGGTCGGATTGAAGTTTGTCATTGGATATTTGAGAACGACATGTCATGGACAGTTGCTGATTAA 1878 0.4611 MNKQLILICLFILFSSIIVTISGDAVAGDKNPFTPRSYVNRYWDKEIRNGLPKPSFLLSKASPLSTVEAATFAKLAAGNSLSTRLPEFCSAANLLCIPEVAASLEKHDKDANFAVYRDKNFTNYGTSRPGGVDLFKSYSDGENIPVNDFRRYSRNSAGHKDSFTSYATESNVADQSFHTYGTGATGGSGDFKQYTKETNNPTLVFSSYSDNSNGRTQSFTSYTENGNAGDQSFSSYGKNGNGPTEEFTSYGTSTNVVGSSFSNYAETSNAGNDSFTNYGIDMNNPTNNFNNYANEGNGAVQTFSNYREKANVGADTFTSYAKTANAAKVDFNNYGKSFNDGTDTFTSYAKTSTGETKVNFKGYGVKNSFKEYTKDGVSFAKYTNVSSTVEERKNTVSGNLVKKWVEPGKFFREKMLKEGTVMPMPDISDKLPKRSFLPRSILSKLPFSTSKISEMKELFKASDNGSMEKMMRDSLGECERVPSRGETKRCVGSIEDMIDFATSVLGRNVVVRTTQNLNGSKKSVMVGRVSGINGGKITRSVSCHQSLFPSLLYYCHSVPMVRVYQADLLDPKSKDKINQGVAVCHLDTSDWSSTHGAFMSLGSGPGRIEVCHWIFENDMSWTVAD 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04668 625 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 12 625 - -
Vifa1g04668 625 ProSiteProfiles BURP domain profile. 410 624 IPR004873 -
Vifa1g04668 625 SMART BURP_2 408 624 IPR004873 -
Vifa1g04668 625 Pfam BURP domain 410 622 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04668 Vifa-Chr1 729695507 729697485 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04668 - - gmx:100776642 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04668 1 729695507 729697485 Vifa1g04668 1 729695507 729697485 ECH
Vifa1g04668 1 729695507 729697485 Vifa4g01805 4 511844099 511846114 PCT