Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02245 ATGGATAGAGTGAAGGATTTGGCATCAAAGACAGCTGCAGTTGTATTCACAAAGAGTTCATGCTACATGTGTCACAGCATAACACAGCTCTTTTATGAGCTAGGTGCAAGCCCTGCAGTGCATGATCTTGACACTGAACCCTATGGTAGGGAAATGGAAAGGGCTCTAAGGAGCCTTGGATGTAACCCTTCAGTTCCAGCAGTGTTCATTGGTGGAAAATTTGTAGGCTCATCAAAGGATGTGATTTCTCTTCATGTTGACGGTTCCCTCAAGCAAATGCTCATGGCTGCTAGAGCCATTTGGTTCTAG 309 0.4498 MDRVKDLASKTAAVVFTKSSCYMCHSITQLFYELGASPAVHDLDTEPYGREMERALRSLGCNPSVPAVFIGGKFVGSSKDVISLHVDGSLKQMLMAARAIWF 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02245 102 Pfam Glutaredoxin 14 75 IPR002109 -
Vifa3g02245 102 Gene3D Glutaredoxin 1 100 - -
Vifa3g02245 102 NCBIfam glutaredoxin-like family 4 101 IPR011905 -
Vifa3g02245 102 CDD GRX_GRXh_1_2_like 12 93 - -
Vifa3g02245 102 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Vifa3g02245 102 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Vifa3g02245 102 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Vifa3g02245 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Vifa3g02245 102 PANTHER GLUTAREDOXIN 1 101 IPR011905 -
Vifa3g02245 102 SUPERFAMILY Thioredoxin-like 1 101 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02245 Vifa-Chr3 564221023 564221331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02245 1 102 Miscellaneous Gene Families AT4G15690 45.098 1.78e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02245 K03676 - gmx:100305876 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02245 3 564221023 564221331 Vifa3g02245 3 564221023 564221331 ECH
Vifa5g03436 5 1128492322 1128492636 Vifa3g02245 3 564221023 564221331 PCT
Vifa3g02245 3 564221023 564221331 Vifa5g03438 5 1130181211 1130181522 PCT