Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03438 ATGGATTTGTTAGCATCATTGACAGAGAACAAAGCAGTTGTGATGTTCAGCAAAAGCACTTGTATCATGACTCACACAGTGCAAGCACTTATGAGAAATTTTGGAGCCGAGCCTATAATTATTGAGATTGATAAAATGGCAAATGGATATCAAATAGAGAGAGCACTGATTCAGCTTGGTTGTAGACCAAGTGTACCTGCAGTATTCATAGGACAACAATTCATAGGTGGTACTGATGAAGTTATAAGTCTCAATGTTCAAAACAAGCTTGCTCCATTGCTTTTAAAGGCTAGAGCTATATATCTTTGGTAG 312 0.375 MDLLASLTENKAVVMFSKSTCIMTHTVQALMRNFGAEPIIIEIDKMANGYQIERALIQLGCRPSVPAVFIGQQFIGGTDEVISLNVQNKLAPLLLKARAIYLW 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03438 103 SUPERFAMILY Thioredoxin-like 2 99 IPR036249 -
Vifa5g03438 103 CDD GRX_GRXh_1_2_like 12 93 - -
Vifa5g03438 103 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Vifa5g03438 103 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Vifa5g03438 103 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Vifa5g03438 103 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Vifa5g03438 103 NCBIfam glutaredoxin-like family 6 102 IPR011905 -
Vifa5g03438 103 Gene3D Glutaredoxin 2 101 - -
Vifa5g03438 103 Pfam Glutaredoxin 13 75 IPR002109 -
Vifa5g03438 103 PANTHER GLUTAREDOXIN 2 101 IPR011905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03438 Vifa-Chr5 1130181211 1130181522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03438 1 102 Miscellaneous Gene Families AT4G15700 45.098 5.01e-32 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03438 K03676 - gmx:100775606 155.606
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02245 3 564221023 564221331 Vifa5g03438 5 1130181211 1130181522 PCT