Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01685 ATGACTTCCAAACAGAAACAGACTTACAACGTTTGTTTTTGCTGCCGGCGCCGGTTCAAGCTCGCCATATCGGAAGCACCACCGGCGATAAAGGAACTCTATCACAAATACTCCGATGAGAACGCCATCATGACCGCATCTCACCTTCAAAGGTTCCTCATCGAGGTTCAGGGAGATGACAACGTCACAGAGAATGAAGCACAATCCATCATCGACGGTCATAAGCATTTGAGTATCTTTCATCGACGAGGTCTCAATCTCGAGAGCTTCTTCAAGTTTCTCTTCAGTGATAATAACCCTCCTCTATTACCTTCTCGCGGGGTGCATCAGGATATGACTTTACCGTTGTCTCATTATTACATACACACTGGTCATAATTCCTATCTAACTGGAAATCAGCTTAGTAGTGACTGCAGTGACGCGCCTATCATCGTTGCGCTTCAGAGAGGTGTAAGGGTTATTGAATTGGATATATGGCCTAATGGATCTAAGGATGATATTGAAGTTCTTCATGGAAGGACATTGACTACTCCTGTGGCACTTATCAAATGTTTGAGGTCTATTAAGGAGTATGCGTTCGTCGCGTCAGAATATCCCGTTGTGATAACGTTAGAAGACCATCTTACTCCTGATCTTCAAGCCAAAGTGGCTCAGATGGTTACTCAAACATTTGGAGACATACTATTTTGTCCTAGCTCAGAAAGCTTGAAGGAATTTCCTTCACCCGACTCGCTCAAAAGGAGGATTATCATATCAACAAAACCACCTAAAGAGTACCTTGAGGCAAAAGAAGGACAGGAAAAGGAGGAATCAGTAAAGGGAAAGTCTTCAGGGGATGAAGAAGCTTGGGGCAAAGAAGTCCCTAGTTTGAGAGGGGGTACCATATCTGATTACAAGAACAGTGGCGACGACGATGAAGATGATCTTAATGAGGATGAAGATTCTGATGACGCAGAAAAGCCACGTCAAAATGTTTCCGATGAATATAGACGTTTAATTGCTATTCATGCTGGGAAACCTAAAGGTGGATTAGTGGAAGGTCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAGTCACAGCTCGAAAAGGCGGCTGAAACATATGGAAAAGAAATTGTCGGGTTTACTCAGAGGAATATACTGAGAGTGTATCCGAAAGGTACTCGCATTACCTCGTCAAATTATAATCCATTAATTGGGTGGATGCACGGAGCTCAGATGGTTGCATTTAACATGCAGGGGTATGGAAGGTCTCTTTGGTTGATGCAAGGAATGTTCAAAGCCAATGGAGGCTGTGGTTTTGTTAAAAAACCAGATTTTCTATTAAAAACTGGTCCCAAAAATGAGGTTTTTGATCCTAAAGCTTCTTTGCCATTGAAAACTACTTTGAAGGTGACTATATATATGGGGGAAGGATGGTATTATGATTTCAAGCATACACACTTTGATCAATTCTCACCTCCAGACTTCTATGCAAGGGTGGGGATTGCTGGAGTCCCTTCTGACACTATTATGAAAAAAACTAAAACAATAGAGGATAGTTGGTTGCCTTCTTGGAATGAGGTATTCGAGTTCCCACTTTCGGTTCCGGAGTTGGCGCTGCTTCGTATAGAGGTTCATGAGTACGACATGTCTGAGAAGGATGACTTTGGCGGGCAAACATGTTTACCTGTGTGGGAACTAAGAAGTGGAATTCGAGCAATTCCATTACATTCCCGCAAAGGAGAAAAATACAACAATGTAAAGCTTCTCATGCGCTTTGAGTTCGTCTGA 1785 0.4263 MTSKQKQTYNVCFCCRRRFKLAISEAPPAIKELYHKYSDENAIMTASHLQRFLIEVQGDDNVTENEAQSIIDGHKHLSIFHRRGLNLESFFKFLFSDNNPPLLPSRGVHQDMTLPLSHYYIHTGHNSYLTGNQLSSDCSDAPIIVALQRGVRVIELDIWPNGSKDDIEVLHGRTLTTPVALIKCLRSIKEYAFVASEYPVVITLEDHLTPDLQAKVAQMVTQTFGDILFCPSSESLKEFPSPDSLKRRIIISTKPPKEYLEAKEGQEKEESVKGKSSGDEEAWGKEVPSLRGGTISDYKNSGDDDEDDLNEDEDSDDAEKPRQNVSDEYRRLIAIHAGKPKGGLVEGLKVDPDKVRRLSLSESQLEKAAETYGKEIVGFTQRNILRVYPKGTRITSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGFVKKPDFLLKTGPKNEVFDPKASLPLKTTLKVTIYMGEGWYYDFKHTHFDQFSPPDFYARVGIAGVPSDTIMKKTKTIEDSWLPSWNEVFEFPLSVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAIPLHSRKGEKYNNVKLLMRFEFV 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01685 594 Pfam C2 domain 467 567 IPR000008 -
Vifa2g01685 594 SMART plcy_3 329 446 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa2g01685 594 SUPERFAMILY PLC-like phosphodiesterases 110 447 IPR017946 GO:0006629|GO:0008081
Vifa2g01685 594 ProSiteProfiles C2 domain profile. 447 576 IPR000008 -
Vifa2g01685 594 CDD C2_PLC_like 464 593 - -
Vifa2g01685 594 MobiDBLite consensus disorder prediction 258 327 - -
Vifa2g01685 594 FunFam Phosphoinositide phospholipase C 461 594 - -
Vifa2g01685 594 SUPERFAMILY EF-hand 20 112 IPR011992 -
Vifa2g01685 594 Gene3D C2 domain 462 594 IPR035892 -
Vifa2g01685 594 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 359 445 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa2g01685 594 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 110 254 - -
Vifa2g01685 594 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 11 593 IPR001192 GO:0035556
Vifa2g01685 594 PRINTS Phospholipase C signature 238 255 IPR001192 GO:0035556
Vifa2g01685 594 PRINTS Phospholipase C signature 405 423 IPR001192 GO:0035556
Vifa2g01685 594 PRINTS Phospholipase C signature 141 161 IPR001192 GO:0035556
Vifa2g01685 594 PRINTS Phospholipase C signature 384 405 IPR001192 GO:0035556
Vifa2g01685 594 PRINTS Phospholipase C signature 560 570 IPR001192 GO:0035556
Vifa2g01685 594 PRINTS Phospholipase C signature 115 133 IPR001192 GO:0035556
Vifa2g01685 594 MobiDBLite consensus disorder prediction 301 315 - -
Vifa2g01685 594 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 466 593 IPR035892 -
Vifa2g01685 594 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 358 444 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa2g01685 594 CDD PI-PLCc_plant 109 433 - -
Vifa2g01685 594 SMART plcx_3 110 254 IPR000909 -
Vifa2g01685 594 Pfam Phosphoinositide-specific phospholipase C, efhand-like 30 96 IPR015359 -
Vifa2g01685 594 Gene3D Phosphatidylinositol (PI) phosphodiesterase 106 459 IPR017946 GO:0006629|GO:0008081
Vifa2g01685 594 SMART C2_3c 466 574 IPR000008 -
Vifa2g01685 594 MobiDBLite consensus disorder prediction 258 286 - -
Vifa2g01685 594 Pfam Phosphatidylinositol-specific phospholipase C, X domain 112 254 IPR000909 -
Vifa2g01685 594 Gene3D - 25 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01685 Vifa-Chr2 438128925 438131804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01685 6 594 Acyl Lipid Metabolism Gene Families AT3G55940 67.736 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01685 K05857 - gmx:100784534 995.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01685 2 438128925 438131804 Vifa1g02172 1 348165085 348169019 ECH
Vifa1g01219 1 198480068 198484483 Vifa2g01685 2 438128925 438131804 ECH
Vifa2g01685 2 438128925 438131804 Vifa2g01685 2 438128925 438131804 ECH
Vifa2g01685 2 438128925 438131804 Vifa1g02172 1 348165085 348169019 PCT