Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02172 ATGTCAAAACAAACATACAGTGTCTGTTTATGCTGGCATAGAAGATTCAAACTAGCTTTATCAGAAGCACCACAAGAGATCAAGACCCTTTTTGATCAATACTCAGAAAATGAACTCATGACACCTTCAAATCTCAAAAGGTTCTTAATTGAAGTTCAGAAACAAGAACATGCTACTGAAGAAGAAGCGCAGGCTATCATTGATGGTTTCAAACATTTTCATCGAAGGGGTGCTGGACTTAACCTTGAAACTTTCTTCAAGTTTCTATTCAGTGATAGTAACCTTTCTATTTTGCCTTCAATTGGGGTGCATCATGATATGACATTACCCTTGTCACATTATTTCATATATACCGGTCACAATTCCTATCTAACTGGAAATCAGCTGAGCAGTGACTGCAGCGACGTTCCAATCATAAACGCATTGAAGAGAGGTGTAAGAGTAATTGAGTTGGACATATGGCCTAATGCTTCGAAGGATAATGTCGATGTTCTTCACGGAAGGACATTGACAACTCCGGTAGAGCTTATTAGATGTTTGAGGTCTATTAAGGAACATGCCTTCGCCGCATCAGAATATCCGGTTGTAATAACTCTAGAAGACCATCTTACTCCAGATCTTCAGGCTAAAGTAGCCGAGATGGTTACTCAAACGTTCGGAGACATACTATTTGTTCCTGGCTCGGAGAATTTGAAGGAATTTCCTTCTCCGGAATCACTTAAAAAGAGGATTATCATATCAACCAAACCTCCTAAAGAGTATCTTGAGACGAAAGAAGTCCCGAGCTTCAAATGTGCTTCTATATCTGATTACAAGGGAGTCAATTTGGATAAAGATGATATTCACGATGAGGAGGATCATGATGAATCGGACAAATCACATCATCATGTAGCTCCAGAATATAAAGGTTTAATTGCAATTCATGCTGGGAAGTCGAAAGGAGGAATAGATGCATGGCTCAAAGTAGATCCGGAGAAAGCGAGGCGTATAAGTTTAAGTGAGCAACAACTTGAAAAGGCTGTTATAACTCATGGAAAAGAAATCGTCAGGTTTACTCAGAAGAATATTTTGAGGGTGTTTCCAAAAGGTACTCGCATTGACTCGTCGAATTATAACCCATTAATTGGTTGGGTTCATGGAGCTCAAATGGTTGCATTCAACATGCAGGGATATGGGAGATCACTTTGGCTGATGCACGGAATGTTCCGAGCCAATGGAGGATGTGGTTACGTTAAAAAACCAGACTTTCTCTTAACAACCGGTCCGGATAACAAGGTCTTTGATCCTAAAGCTAAGTTACCTGTGAAAACTACTTTAAAGGTGACGGTATACATGGGAGAAGGGTGGTATTACGATTTCAAGCATACACACTTCGATCAATATTCACCTCCCGATTTCTATACAAGAGTTGGGATTGCGGGAGTCCCTAATGATAGTACGATGAAAAAAACAAAGGCAATAGAGGACAATTGGTTGCCTACATGGAACGAGGTATTCGAGTTCCCGCTTACCGTTCCGGAACTAGCCCTACTTCGTATAGAAGTTCACGAGTATGACATGTCTGAGAAAGACGACTTTGGTGGCCAGACATGTCTACCTGTTTCAGAGTTAAGAAGCGGCATTCGAGCAGTTTCACTTCATAGCCAGAAGGGAGATAAATACAACTCTGTAAAGCTTCTTATGCGCTTTGAATTTCATTGA 1701 0.4056 MSKQTYSVCLCWHRRFKLALSEAPQEIKTLFDQYSENELMTPSNLKRFLIEVQKQEHATEEEAQAIIDGFKHFHRRGAGLNLETFFKFLFSDSNLSILPSIGVHHDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDVPIINALKRGVRVIELDIWPNASKDNVDVLHGRTLTTPVELIRCLRSIKEHAFAASEYPVVITLEDHLTPDLQAKVAEMVTQTFGDILFVPGSENLKEFPSPESLKKRIIISTKPPKEYLETKEVPSFKCASISDYKGVNLDKDDIHDEEDHDESDKSHHHVAPEYKGLIAIHAGKSKGGIDAWLKVDPEKARRISLSEQQLEKAVITHGKEIVRFTQKNILRVFPKGTRIDSSNYNPLIGWVHGAQMVAFNMQGYGRSLWLMHGMFRANGGCGYVKKPDFLLTTGPDNKVFDPKAKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYTRVGIAGVPNDSTMKKTKAIEDNWLPTWNEVFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVSELRSGIRAVSLHSQKGDKYNSVKLLMRFEFH 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02172 566 SUPERFAMILY PLC-like phosphodiesterases 105 418 IPR017946 GO:0006629|GO:0008081
Vifa1g02172 566 CDD PI-PLCc_plant 104 405 - -
Vifa1g02172 566 SUPERFAMILY EF-hand 14 100 IPR011992 -
Vifa1g02172 566 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 331 417 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa1g02172 566 SMART plcy_3 301 418 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa1g02172 566 FunFam Phosphoinositide phospholipase C 433 566 - -
Vifa1g02172 566 Pfam C2 domain 439 540 IPR000008 -
Vifa1g02172 566 SMART C2_3c 438 546 IPR000008 -
Vifa1g02172 566 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 438 565 IPR035892 -
Vifa1g02172 566 Gene3D C2 domain 433 566 IPR035892 -
Vifa1g02172 566 CDD C2_PLC_like 436 565 - -
Vifa1g02172 566 Gene3D Phosphatidylinositol (PI) phosphodiesterase 101 431 IPR017946 GO:0006629|GO:0008081
Vifa1g02172 566 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 329 416 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa1g02172 566 Pfam Phosphatidylinositol-specific phospholipase C, X domain 107 249 IPR000909 -
Vifa1g02172 566 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 11 565 IPR001192 GO:0035556
Vifa1g02172 566 FunFam Phosphoinositide phospholipase C 102 431 - -
Vifa1g02172 566 Gene3D - 22 100 - -
Vifa1g02172 566 Pfam Phosphoinositide-specific phospholipase C, efhand-like 25 71 IPR015359 -
Vifa1g02172 566 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 105 249 - -
Vifa1g02172 566 ProSiteProfiles C2 domain profile. 419 548 IPR000008 -
Vifa1g02172 566 PRINTS Phospholipase C signature 377 395 IPR001192 GO:0035556
Vifa1g02172 566 PRINTS Phospholipase C signature 532 542 IPR001192 GO:0035556
Vifa1g02172 566 PRINTS Phospholipase C signature 233 250 IPR001192 GO:0035556
Vifa1g02172 566 PRINTS Phospholipase C signature 136 156 IPR001192 GO:0035556
Vifa1g02172 566 PRINTS Phospholipase C signature 110 128 IPR001192 GO:0035556
Vifa1g02172 566 PRINTS Phospholipase C signature 356 377 IPR001192 GO:0035556
Vifa1g02172 566 SMART plcx_3 105 249 IPR000909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02172 Vifa-Chr1 348165085 348169019 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02172 1 565 Acyl Lipid Metabolism Gene Families AT3G55940 66.498 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02172 K05857 - tcc:18585851 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01685 2 438128925 438131804 Vifa1g02172 1 348165085 348169019 ECH
Vifa1g01219 1 198480068 198484483 Vifa1g02172 1 348165085 348169019 ECH
Vifa1g02172 1 348165085 348169019 Vifa1g02172 1 348165085 348169019 ECH
Vifa2g01685 2 438128925 438131804 Vifa1g02172 1 348165085 348169019 PCT