Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01219 ATGGGAAGCTACCGAGTCTGCATGTGCTTCCGGCGGAGTTTCAAGTCAGGGGATGCCGTGGTGCCTGAAGAGATCCGGGAGCTTTTCAACAAGTACTCCGAAGGTGGGGCCCACATGACTCCCGACCAGCTCCGCCGCTTCCTCGCGGAGGTTCAGGGCGAGGCTGTGGATGATGAGAGGGATGAAGTTGACACGCAAAAGGTAGTGGAGGATGTTTTGCAAAAGCGGCATTACATTACGAAATTTGCGAGGCATAATCTTACGCTCGATGATTTTCATCATTATCTGTTCTCTACGGAATTTAACCCTCCGATTAGATCTCAGGTTAATCAGGATATGACAGCTCCATTGTCCCATTATTTCGTATATACTGGCCATAACTCCTATCTCACTGGAAATCAACTCAGCAGTGTTTGTAGTGATGTTCCCATTATAAAGGCATTGAAAAGAGGTGTGAGAGTTGTTGAGCTTGATATTTGGCCCAATTCCACCAAAGATGATATTCTTGTTTTACATGGAAGGACATTGACACCACCTGTGGAGTTGATGAAATGTTTGAAATCCATTAAAGATTACGCTTTTGTTGCATCTCCTTATCCCGTCATAATTACTCTAGAAGACCATCTTAAAGCAGACCTTCAAAAAAAAGCTGCTCAGATGATAACTCAAACATTTGGAGATATGTTGTTCTATCCGAATGATGAAAATTTAAACAATATTCCTTCACCTGAAGAATTGAAGCATAGGATCATGATATCAACGAAACCTCCAAAAGAGTACTTAAATTCCAAAAGTGTGAGGGAGAGTTCCAAACAGTTGGTGAAATCAAATTCAAAGGATTCCAATGAAGACGAATGGAGAAAAGAAGCCACTGATGTTGTAAATACACAAAATGAAGATGATAAGGATGACTCTGACACAAATCAACTGAATGATGATGATGATGTATCAAGTGATGATGACTATGAATCAAATCAGGAGAGTGAATATAAACGATTAATTGCTATTCATGCTGGAAAACCCAAGGGTAGTCTTAAGGAAGCCTTAAAAGTTGAAGACGATAAAGTGAGACGCCTTAGCTTAAGTGAACAAGCTCTTGAAAAGGCTTCTGAGTCACTTGGAACTGATCTTATTAGGTTCACCCAGAAAAACTTTTTGAGGATATATCCAAAGGGTACACGAGTCACCTCCTCCAACTACAAGCCAATGGTTGGCTGGATGCATGGTGCTCAAATGGTTGCATTCAATATGCAGGGATATGGCAAAAATCTTTGGTTGATGCATGGGATGTTTAGATCCAATGGTGGTTGTGGTTATGTAAAAAAACCAGACTTTCTTATGAATGTAAGTCCAAATAATGAGGTATTCAATCCTAAAGATAAGTTGCAAGTGAAGAAGACACTTAAGGTAAAAATATATGTGGGAGATGGATGGAGTATAGATTTCGACAAAACTCACTTTGACTCGTATTCTCCACCAGATTTTTATGCCAGGGTTGGCATAGCTGGAGTGCCGGCTGATGTAACAATGAAGGAAACAAAGATAAAAGAGGATAATTGGATACCAACTTGGGAAGAAGAGTTTACCTTCCCTTTAACTGTCCCGGAACTTGCTTTGCTAAGAGTCGAAGTTCAAGAATATGACATATCTGAGACAGATGATTTTGCAGGCCAAACATGTTTACCAATCACAGAACTAAAACAAGGGATCCACGCAGTTCCACTATTCGACCGAAAAGGAAAGCAGTACAAGTCAGTAAAGCTTCTTATGCGTTTTGATTTTATTTAA 1788 0.4032 MGSYRVCMCFRRSFKSGDAVVPEEIRELFNKYSEGGAHMTPDQLRRFLAEVQGEAVDDERDEVDTQKVVEDVLQKRHYITKFARHNLTLDDFHHYLFSTEFNPPIRSQVNQDMTAPLSHYFVYTGHNSYLTGNQLSSVCSDVPIIKALKRGVRVVELDIWPNSTKDDILVLHGRTLTPPVELMKCLKSIKDYAFVASPYPVIITLEDHLKADLQKKAAQMITQTFGDMLFYPNDENLNNIPSPEELKHRIMISTKPPKEYLNSKSVRESSKQLVKSNSKDSNEDEWRKEATDVVNTQNEDDKDDSDTNQLNDDDDVSSDDDYESNQESEYKRLIAIHAGKPKGSLKEALKVEDDKVRRLSLSEQALEKASESLGTDLIRFTQKNFLRIYPKGTRVTSSNYKPMVGWMHGAQMVAFNMQGYGKNLWLMHGMFRSNGGCGYVKKPDFLMNVSPNNEVFNPKDKLQVKKTLKVKIYVGDGWSIDFDKTHFDSYSPPDFYARVGIAGVPADVTMKETKIKEDNWIPTWEEEFTFPLTVPELALLRVEVQEYDISETDDFAGQTCLPITELKQGIHAVPLFDRKGKQYKSVKLLMRFDFI 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01219 595 FunFam Phosphoinositide phospholipase C 462 595 - -
Vifa1g01219 595 PRINTS Phospholipase C signature 142 162 IPR001192 GO:0035556
Vifa1g01219 595 PRINTS Phospholipase C signature 406 424 IPR001192 GO:0035556
Vifa1g01219 595 PRINTS Phospholipase C signature 561 571 IPR001192 GO:0035556
Vifa1g01219 595 PRINTS Phospholipase C signature 239 256 IPR001192 GO:0035556
Vifa1g01219 595 PRINTS Phospholipase C signature 116 134 IPR001192 GO:0035556
Vifa1g01219 595 PRINTS Phospholipase C signature 385 406 IPR001192 GO:0035556
Vifa1g01219 595 Pfam C2 domain 469 569 IPR000008 -
Vifa1g01219 595 Pfam Phosphatidylinositol-specific phospholipase C, X domain 113 255 IPR000909 -
Vifa1g01219 595 CDD PI-PLCc_plant 111 434 - -
Vifa1g01219 595 MobiDBLite consensus disorder prediction 258 327 - -
Vifa1g01219 595 Pfam Phosphoinositide-specific phospholipase C, efhand-like 23 100 IPR015359 -
Vifa1g01219 595 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 360 446 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa1g01219 595 SMART plcx_3 111 255 IPR000909 -
Vifa1g01219 595 MobiDBLite consensus disorder prediction 305 323 - -
Vifa1g01219 595 SMART C2_3c 467 575 IPR000008 -
Vifa1g01219 595 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 467 594 IPR035892 -
Vifa1g01219 595 CDD C2_PLC_like 465 594 - -
Vifa1g01219 595 Gene3D - 21 104 - -
Vifa1g01219 595 SMART plcy_3 330 447 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa1g01219 595 MobiDBLite consensus disorder prediction 273 304 - -
Vifa1g01219 595 SUPERFAMILY PLC-like phosphodiesterases 111 448 IPR017946 GO:0006629|GO:0008081
Vifa1g01219 595 SUPERFAMILY EF-hand 15 113 IPR011992 -
Vifa1g01219 595 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 8 594 IPR001192 GO:0035556
Vifa1g01219 595 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 358 445 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa1g01219 595 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 111 255 - -
Vifa1g01219 595 Gene3D C2 domain 461 595 IPR035892 -
Vifa1g01219 595 ProSiteProfiles C2 domain profile. 441 577 IPR000008 -
Vifa1g01219 595 Gene3D Phosphatidylinositol (PI) phosphodiesterase 108 459 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01219 Vifa-Chr1 198480068 198484483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01219 1 595 Acyl Lipid Metabolism Gene Families AT5G58700 62.040 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01219 K05857 - cit:102623592 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01219 1 198480068 198484483 Vifa1g01219 1 198480068 198484483 ECH
Vifa1g01219 1 198480068 198484483 Vifa2g01685 2 438128925 438131804 ECH
Vifa1g01219 1 198480068 198484483 Vifa1g02172 1 348165085 348169019 ECH