Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04114 ATGGCTCATTCTACTACCTCTTCAGTTGAAACCAATGGTCTTACAAAAGAAGACCATAAGGAAACAAGTTCATTGGTGGTTTCCTTTGGGGAAATGCTGATTGACTTTGTGCCAACAGTCAGAGGAGTTTCACTCGCGGAGGCACCGGATTTCAAGAAAGCTCCTGGTGGAGCTCCTGCCAATGTAGCTGTTGGTATCTCTAGACTAGGCGGTTCATCTGCTTTCATAGGCAAGGTTGGAGCGGATGAATTTGGTTACATGTTGGCCGATATTTTAAAGCAAAACAATGTCGATACTTCTGGCATGCGGTTTGACACTAATGCAAGAACTGCATTAGCTTTTGTCACGCTTAGATCTGACGGCGAGCGCGAGTTCTTGTTTTTCCGGAATCCAAGTGCTGATATGCTTCTTCAAGAATCAGAACTTGATAGAAATCTCCTAAAGCAGGCTAGAATTTTCCATTATGGTTCCATTAGTTTAATTGATGATCCATGCAAATCAGCACACATTGCTGCTATGAACATTGCCAAAAACTCGGGTTGCATTCTCTCTTACGATCCAAATTTGAGATTGGCGTTATGGCCGTCTGCAGAGGCTGCTCGGAATGGCATAATGAGTATATGGGATCAAGCCGATGTCATTAAGATAAGTGAAGATGAGATTACATTTTTGACTGGAGGTGATGATCCTTATGATGATGATGTTGTTTTGAAGAAACTTTTTCATCCTAATCTCAAACTCTTGATTGTTACCGAAGGGTCCGAGGGTTGTAGATATTACACACAGGAATTTAGAGGCAGAGTTGGAGGTGTTAAAGTTAAACCTGTTGACACAACTGGTGCTGGTGATGCATTTGTTAGTGGAATTCTATACAATATAGCTTCTGACCAAACTATTTTCAAGGATGAGAAAAAACTGAGAAAGGCTTTGTATTTTGCTAATGTATGTGGTGCCATAACTGTAACAGAAAGAGGAGCAATTCCTTCACTTCCTACAAAAGAAGCTGTTTTGCAATTCTTACTAGAAGCAGCTGTAATATAA 1041 0.4083 MAHSTTSSVETNGLTKEDHKETSSLVVSFGEMLIDFVPTVRGVSLAEAPDFKKAPGGAPANVAVGISRLGGSSAFIGKVGADEFGYMLADILKQNNVDTSGMRFDTNARTALAFVTLRSDGEREFLFFRNPSADMLLQESELDRNLLKQARIFHYGSISLIDDPCKSAHIAAMNIAKNSGCILSYDPNLRLALWPSAEAARNGIMSIWDQADVIKISEDEITFLTGGDDPYDDDVVLKKLFHPNLKLLIVTEGSEGCRYYTQEFRGRVGGVKVKPVDTTGAGDAFVSGILYNIASDQTIFKDEKKLRKALYFANVCGAITVTERGAIPSLPTKEAVLQFLLEAAVI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04114 346 Gene3D - 22 345 IPR029056 -
Vifa1g04114 346 Pfam pfkB family carbohydrate kinase 25 332 IPR011611 -
Vifa1g04114 346 PRINTS Ribokinase signature 248 259 IPR002139 GO:0016301
Vifa1g04114 346 PRINTS Ribokinase signature 206 221 IPR002139 GO:0016301
Vifa1g04114 346 PRINTS Ribokinase signature 51 70 IPR002139 GO:0016301
Vifa1g04114 346 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 56 80 IPR002173 GO:0016301
Vifa1g04114 346 FunFam Probable fructokinase-2 23 344 - -
Vifa1g04114 346 SUPERFAMILY Ribokinase-like 26 340 IPR029056 -
Vifa1g04114 346 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 277 290 IPR002173 GO:0016301
Vifa1g04114 346 CDD bac_FRK 25 327 - -
Vifa1g04114 346 PANTHER HEXOKINASE FAMILY MEMBER 25 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04114 Vifa-Chr1 633774093 633777623 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04114 K00847 - gmx:100792618 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04114 1 633774093 633777623 Vifa1g04114 1 633774093 633777623 ECH
Vifa1g04114 1 633774093 633777623 Vifa3g03007 3 855772415 855774353 ECH
Vifa1g04114 1 633774093 633777623 Vifa3g03007 3 855772415 855774353 PCT
Vifa1g04114 1 633774093 633777623 Vifa6g00904 6 307091047 307092767 PCT