Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03007 ATGGCTCAATTTACCCCCTCAGGTAAATCTGATGATCGCGTGACAGAAGGATGCGATGAAACAAGTGGACTGGTTGTTTGTTTTGGTGAGTTGTTGATAGATTTTGTGCCGACGGTTGGAGGAGTGTCGCTAGCTGAAGCGCCTGCTTTCAAGAAAGCTCCTGGTGGTGCTCCTGCGAATGTTGCAGTTGGCATCTCTAGGTTGGGGGGTTCGTCTGCATTTATAGGCAAGGTTGGAGCAGATGAATTTGGTTATATGTTAGCTGATATTTTGAAGCAAAATAACGTTGGTACATCTGGCATGCGGTATGATTCTATTGCAAGAACTGCATTGGCTTTTGTTACACTTAGAGCAGACGGCGAGCGCGAGTTCTTGTTTTTCCGAAATCCTAGTGCTGATATGCTCCTGCATGAGTCAGAGCTTGATCACAACCTCATTGAGAAGGCTAAAATATTCCATTACGGTTCCATCAGTTTGATCGACGAGCCAATCAAATCAGCTCATCTTGCTGCCTTGAGAATTGCTAAAGACTCTGATTGCATTCTCTCGTATGATCCGAATTTGAGATTAGCACTATGGCCATCACCCGAGGCTGCTCGGGATGGTATAATGAGCATATGGGATCTAGCCGATGTCATAAAGGTCAGTGAAGATGAGATTACGTTTTTAACGGGCGGCGATGATCCTTATGACGATAATGTTGTATTAAACAAGCTTTTTCATCCTAGTCTCAAGCTTCTAATTGTTACTGAAGGGTCAGAGGGTTGTAGATATTACACCAAGGATTTTAAAGGAAAAGTCAGAGGTGTAAAAGTTAAACCCGTTGACACAACTGGTGCTGGTGACGCATTTGTTAGTGGGATTCTCTACAAGATAGCTTCTGACCCAAGTATTTTCAAGGACGAGAAGCGTCTCCAAGAAGCGCTATATTTCGCCAATGTATGTGGCGCGATCACGGTGACAGATAGAGGGGCAATTCCTGCACTACCTACGAAAGATGCTGTCATGCAATTCAATGCAAAATAG 1026 0.4415 MAQFTPSGKSDDRVTEGCDETSGLVVCFGELLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGADEFGYMLADILKQNNVGTSGMRYDSIARTALAFVTLRADGEREFLFFRNPSADMLLHESELDHNLIEKAKIFHYGSISLIDEPIKSAHLAALRIAKDSDCILSYDPNLRLALWPSPEAARDGIMSIWDLADVIKVSEDEITFLTGGDDPYDDNVVLNKLFHPSLKLLIVTEGSEGCRYYTKDFKGKVRGVKVKPVDTTGAGDAFVSGILYKIASDPSIFKDEKRLQEALYFANVCGAITVTDRGAIPALPTKDAVMQFNAK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03007 341 PANTHER HEXOKINASE FAMILY MEMBER 24 338 - -
Vifa3g03007 341 SUPERFAMILY Ribokinase-like 25 338 IPR029056 -
Vifa3g03007 341 CDD bac_FRK 24 326 - -
Vifa3g03007 341 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 55 79 IPR002173 GO:0016301
Vifa3g03007 341 FunFam Probable fructokinase-2 22 341 - -
Vifa3g03007 341 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 276 289 IPR002173 GO:0016301
Vifa3g03007 341 Gene3D - 22 341 IPR029056 -
Vifa3g03007 341 PRINTS Ribokinase signature 205 220 IPR002139 GO:0016301
Vifa3g03007 341 PRINTS Ribokinase signature 50 69 IPR002139 GO:0016301
Vifa3g03007 341 PRINTS Ribokinase signature 247 258 IPR002139 GO:0016301
Vifa3g03007 341 Pfam pfkB family carbohydrate kinase 24 331 IPR011611 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03007 Vifa-Chr3 855772415 855774353 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03007 K00847 - gmx:100818404 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04114 1 633774093 633777623 Vifa3g03007 3 855772415 855774353 ECH
Vifa3g03007 3 855772415 855774353 Vifa3g03007 3 855772415 855774353 ECH
Vifa1g04114 1 633774093 633777623 Vifa3g03007 3 855772415 855774353 PCT