Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00904 ATGGCCTCCAACAACTCCCTCCTCCCCACCACCGGCGAAGGTCTAATCGTCAGTTTCGGTGAGATGCTCATAGACTTCGTCCCCACCGTCTCCGGCGTCTCCCTCGCCGAGGCTCCCGGTTTCCTCAAAGCCCCCGGCGGCGCACCAGCTAACGTCGCGATCGCCGTCTCCAGACTCGGCGGAAAATCCGCCTTTGTCGGAAAACTCGGTGATGATGAATTCGGACACATGCTCGCCGGGATCTTGAAGGAGAACAACGTCAGAGCCGACGGCATAAACTTCGATAAAGGCGCTCGCACTGCACTCGCTTTCGTCACGTTACGCGCCGACGGTGAACGCGAGTTCATGTTCTACAGAAACCCTAGCGCCGATATGCTTCTAACTCCAGAAGATCTCAATCTTGAACTCATCAGATCTGCAAAAGTGTTCCATTATGGATCAATAAGTTTGATTGTGGAGCCGTGCAGAACAGCACATCTGAAGGCGATGGAAGTTGCCAAAGAAGCAGGGTGCTTACTCTCGTATGATCCAAACCTCCGGCTACCTTTGTGGCCCTCACCTGAGGAAGCTCGTAAGCAAATACTCAGTATATGGGATAAGGCTGACCTCATCAAGGTCAGTGATGTGGAGCTTGAATTTTTAACAGGGAGTGATAAAATTGATGATGCTTCTGCTCTTTCCTTGTGGCACCCCAATTTGAAGTTGCTTCTTGTAACTCTCGGTGAAAATGGTTCCAGATACTATACCAAGAATTTCAATGGTTCGGTGGATGCTTTCCATGTTAACACTGTTGATACAACTGGAGCTGGTGATTCATTTGTTGGAGCTTTGTTGGGTAAGATTGTTGATGATCAATCTATACTTGAAGATGAAGCAAGGTTAAGAGAAGTGCTGAAATTTGCAAATGCATGTGGAGCTATTACAACTACTAAAAAAGGAGCAATTCCAGCTCTTCCCACAGAAGCTGATGTTCTCAGCCTGATCAAAAAGGCATAG 996 0.4839 MASNNSLLPTTGEGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGKSAFVGKLGDDEFGHMLAGILKENNVRADGINFDKGARTALAFVTLRADGEREFMFYRNPSADMLLTPEDLNLELIRSAKVFHYGSISLIVEPCRTAHLKAMEVAKEAGCLLSYDPNLRLPLWPSPEEARKQILSIWDKADLIKVSDVELEFLTGSDKIDDASALSLWHPNLKLLLVTLGENGSRYYTKNFNGSVDAFHVNTVDTTGAGDSFVGALLGKIVDDQSILEDEARLREVLKFANACGAITTTKKGAIPALPTEADVLSLIKKA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00904 331 SUPERFAMILY Ribokinase-like 16 328 IPR029056 -
Vifa6g00904 331 PANTHER HEXOKINASE FAMILY MEMBER 15 326 - -
Vifa6g00904 331 Pfam pfkB family carbohydrate kinase 15 320 IPR011611 -
Vifa6g00904 331 CDD bac_FRK 15 315 - -
Vifa6g00904 331 Gene3D - 14 331 IPR029056 -
Vifa6g00904 331 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 46 70 IPR002173 GO:0016301
Vifa6g00904 331 PRINTS Ribokinase signature 41 60 IPR002139 GO:0016301
Vifa6g00904 331 PRINTS Ribokinase signature 236 247 IPR002139 GO:0016301
Vifa6g00904 331 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 265 278 IPR002173 GO:0016301
Vifa6g00904 331 FunFam Probable fructokinase-2 13 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00904 Vifa-Chr6 307091047 307092767 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00904 K00847 - gmx:100780082 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04114 1 633774093 633777623 Vifa6g00904 6 307091047 307092767 PCT