Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03640 ATGGGAGAGGAAGTAATTATAGACAACGCTCCCTTGATTGATCACTACTCGTATTCTGGCGACATGTTTGTTAATGAGTCTTTCAGAAGAACAGGTAACATGTGGAGCGCGGCAGCGCATATAATAACAGGGGTGATAGGAGCAGGTGTATTGTCACTATCATGGTCTGTGGCGCAATTAGGATGGATTGCAGGTCCTATCTGTATTCTACTATTTGCAGGCACTACCTTCATTTCAACATACCTTCTTTCTGATTGTTATAGATTTCACCATCCTCAACATGGCAGCATTAGGTGCTCCTCGTACACGGATGCCGTCAATTTGTACCTTGGCGCAATCAAGGGAAAGGTGTGTGGAGTGTTGGTGCATGTGAGCTTATATGGTGCTGCATGTGCCTATGTCATTACATCTGCAACCAGCATCAGAGCGATTTTGAAATCAAATTGTTACCACAAGGAAGGACATGAAGCACCTTGTAAATATGGGGATGCTATGTATGTGGTGCTGTTTGGACTTGTTCAGGTCATAATGTCATTCATACCAGATTTCCACAACATGGCATTGCTTTCAGTTGTTGCAGCTATTATGTCATTTTCATACGCATCTATTGGAATCGGACTTGGATTCAAAAAAGTTATAGAAAATGGAAGAGTTATGGGGAGTGTAACCGGAATACCAGCTTCAAATATTGCAGATAAGTTATGGTTAGTCTTCCAAGCACTTGGTGATATTGCTTTTGCCTATCCATACACTGTCATCCTCCTTGAGATACAGGATACTTTAAAGTCTCCTCCATCAGAAAACCGGACCATGAAAAAGGCTTCCATGATTGCAGTCTCCATTACAACATTCTTCTACCTTTGTTGCGCATGCTTCGGATACGCAGCTTTTGGAAACCAAACACCTGGAAACCTCTTGACAGGTTTTGGTTTTTATGAACCTTATTGGCTCATTGACTTTGCTAATGCTTGCATTGTTCTTCATTTGGTTGGAGGATATCTGATTTATAGTCAACCGACATATAGTGCTGCTGATAAATGGTGTTCAAGAAGCTATCCCAACAGCCGTTTTGTGAATAGTTTCTACCGATTGAAACTTCCTTTTTTACCGGATTTTCAGATTAACATGTCGCGGATATGTACTAGAACAGTTTATGTGATATCCACAACTGGACTTGCAATCATGTTTCCTTACTTCAATCAAGTTCTAGGAGTGCTAGGTGCAATAGGATTTTGGCCATTGACTATATATTTTCCAGTAGAGATGTATTTTGTACAGAATAAAGTTGAAGCTTGGTCTACAAAATGGATTACTCTTAGGATTCTTAGCTTTGTTTGCTTTTTGATCACAGTAGTGAGTCTTGTTGGATCACTTGAAGGAATCATAAGCCAGAAACTAAGTTGA 1404 0.4031 MGEEVIIDNAPLIDHYSYSGDMFVNESFRRTGNMWSAAAHIITGVIGAGVLSLSWSVAQLGWIAGPICILLFAGTTFISTYLLSDCYRFHHPQHGSIRCSSYTDAVNLYLGAIKGKVCGVLVHVSLYGAACAYVITSATSIRAILKSNCYHKEGHEAPCKYGDAMYVVLFGLVQVIMSFIPDFHNMALLSVVAAIMSFSYASIGIGLGFKKVIENGRVMGSVTGIPASNIADKLWLVFQALGDIAFAYPYTVILLEIQDTLKSPPSENRTMKKASMIAVSITTFFYLCCACFGYAAFGNQTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYLIYSQPTYSAADKWCSRSYPNSRFVNSFYRLKLPFLPDFQINMSRICTRTVYVISTTGLAIMFPYFNQVLGVLGAIGFWPLTIYFPVEMYFVQNKVEAWSTKWITLRILSFVCFLITVVSLVGSLEGIISQKLS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03640 467 PANTHER OS05G0424000 PROTEIN-RELATED 33 461 - -
Vifa1g03640 467 Pfam Transmembrane amino acid transporter protein 31 462 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03640 Vifa-Chr1 560735306 560737804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03640 13 449 Organic Solute Cotransporters AT1G77380 49.433 5.48e-167 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03640 K24917 - gmx:100786621 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03640 1 560735306 560737804 Vifa1g03640 1 560735306 560737804 ECH
Vifa2g01144 2 307292933 307294826 Vifa1g03640 1 560735306 560737804 PCT
Vifa1g03640 1 560735306 560737804 Vifa2g01143 2 305509025 305511015 PCT