Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01144 ATGGATGGAAAAAACTCTCTTCAAATAACAAGAACTGCTTCTGGTGGTTATGATGATGATGGACATGCGAAAAGAACAGGAAATTTAAAGAGTGCTGTGGCTCATATCATAACTGCTGTTATTGGTTCTGGTGTTTTGTCATTGGCATGGAGTACTGCTCAATTAGGATGGATAGGAGGGCCAGTTGCTCTACTTTGTTGCGCAATTGTTACTTATGTTTCTTCATTTTTGTTATCTGATTGCTATAGAAATCCCGATCCAGTGACCGGAAAAAGAAACTACTCTTACATGGATGCTGTTAGAGTCAATCTTGGTAATAAAAGGACTTATGTGGCTGGTTTCCTTCAGTTTTTGGTCTTGTATGGGACTGGTACAGCCTATGTAATTACCACAGCAACTAGTTTGAAGGCTATTATGAGATCAAATTGTTATCACAAAGAAGGACACCAAGCTCCTTGTAGTTACGACGCTAATTTGTATATGATGCTATTTGGACTTGTTCAGATTGTAATGTCATTTATACCAGATCTCCATAACATGGCATGGGTTTCAATTGTGGCTGCTATTATGTCTTTCACATATTCATTCATTGGACTAGGACTCGGCATAGCAACCGTCATAGAAAACGGAACAATTATGGGAAGTGTGACAGGAGTAGAACCTGCTAATCGTGCCGACAAAATCTGGTTAATCTTCCAGGCACTTGGTGACATTAGTTTCTCATATCCATATGCAATTCTCCTTCTTGAGATACAGGACACTCTAGAGTCTCCTCCACCAGAGAATCAAACCATGAAAAAGGCTTCCATGGTTGCAATCTTCATCACAACATTCTTCTACCTATGTTGTGGATGCTTTGGATATGCAGCTTTCGGAAGTGCTACACCAGGAAACTTGCTGACAGGGTTTGGATTTTACGAGCCTTTCTGGCTCATCGACCTTGCGAATGTTTGCATTATCATTCATTTGGTTGGAGGATATCAGATATACAGTCAACCAGTATATAGTACTGCTGATAGATGGTGTGCAAAGAAATACCCCAACAGCGGCTTTGTGAATGATTTCCACAGAGTGAAACTTCCTCTATTACCGGCTTTTGAGATAAATCTTTTCAGATTTTGTTTCAGAACAGCCTATGTGATTTCAACCACTGGACTTGCAATTTTGTTTCCTTACTTCAACCAAGTTCTTGGAGTTTTAGGAGCAATCAACTTTTGGCCACTGGCTATATATTTTCCAGTTGAAATGTACTTTGTGCAGAACAAAATTGGAGCTTGGACTAGAAAATGGATTGTTCTAAGGATATTTAGCTTTGCTTGCTTTCTTGTCACAATGGTTGGGTTTGTTGGATCAATTGAAGGTATAATAAGTCAGAAAATTAGTGGAAAAGGTTAA 1395 0.3914 MDGKNSLQITRTASGGYDDDGHAKRTGNLKSAVAHIITAVIGSGVLSLAWSTAQLGWIGGPVALLCCAIVTYVSSFLLSDCYRNPDPVTGKRNYSYMDAVRVNLGNKRTYVAGFLQFLVLYGTGTAYVITTATSLKAIMRSNCYHKEGHQAPCSYDANLYMMLFGLVQIVMSFIPDLHNMAWVSIVAAIMSFTYSFIGLGLGIATVIENGTIMGSVTGVEPANRADKIWLIFQALGDISFSYPYAILLLEIQDTLESPPPENQTMKKASMVAIFITTFFYLCCGCFGYAAFGSATPGNLLTGFGFYEPFWLIDLANVCIIIHLVGGYQIYSQPVYSTADRWCAKKYPNSGFVNDFHRVKLPLLPAFEINLFRFCFRTAYVISTTGLAILFPYFNQVLGVLGAINFWPLAIYFPVEMYFVQNKIGAWTRKWIVLRIFSFACFLVTMVGFVGSIEGIISQKISGKG 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01144 464 Pfam Transmembrane amino acid transporter protein 26 456 IPR013057 -
Vifa2g01144 464 PANTHER OS05G0424000 PROTEIN-RELATED 31 452 - -
Vifa2g01144 464 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01144 Vifa-Chr2 307292933 307294826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01144 6 443 Organic Solute Cotransporters AT1G77380 52.608 2.34e-179 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01144 K24917 - gmx:100818535 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01144 2 307292933 307294826 Vifa2g01144 2 307292933 307294826 ECH
Vifa2g01144 2 307292933 307294826 Vifa1g03640 1 560735306 560737804 PCT