Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02672 ATGACCGTGATGACTCCTGCTCCCATTGATCAGCAACAGCAGCAGGAGGATGAGGAGATGCTTGTCCCGCACACTGTTCCACATGCTGATTTGGCTGAGAATAACCATGAACCTATGGATGTTGTTGCTCAACCTGAAATTGCCAACCCTGTGGAGCCTGCTGAGGATCCTACACCAACAAGATTCGCATGGAAAATTGACAACTTTTCTAGGATGAACACGAAAAAGCTCTATTCAGATGTATTTGTTGTTGGGAGTTTCAAATGGCGTGTACTTATTTTCCCAAAAGGGAACAATGTCGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAACTAGTTTGCCCTACGGTTGGAGTAGATATGCACAGTTTAGCTTGACAGTTGCTAATCAAATCCATACTAAGTACTCTGTGAGAAAAGACACGCAGCATCAGTTCAATGCACGAGAAAGTGATTGGGGTTTCACATCCTTCATGCCTCTCGGTGAATTGTATGATCCTAGTAGAGGGTATCTCATGAATGATACTCTTCTAATTGAAGCTGAGGTCATTGTCCGTAGGATTGTTGATTACTGGACTTACGATTCAAAAAAGGAGACGGGATATGTTGGGCTCAAGAACCAGGGAGCTACATGTTATATGAATTCTCTGCTCCAAACTTTGTATCATATTCCTTATTTCCGAAAGGCTGTATACCATATGCCTACAACAGAGAATGATATGCCCTCTGGAAGCATCCCCTTGGCTCTGCAAAGTTTGTTTTACAAGCTCCAGTACAGTGACACCAGTGTCGCAACAAAAGAGCTGACAAAATCGTTTGGATGGGATACTTACGATTCGTTCTTGCAGCATGATGTTCAAGAATTAAATAGAGTTCTTTGTGAAAAACTTGAAGACAAAATGAAGGCAACTGTTGTTGAGGGAACTATACAGAAATTGTTTGAAGGGCACCACATGAACTATATCGAGTGCATCAATGTGGACTATAAATCAACACGAAAGGAGTCATTTTATGATCTTCAACTTGATGTCAAAGGTTGTCCTGATGTTTATGCTTCATTTGACAAGTATGTTGAAGTTGAACGTCTTGAGGGGGACAACAAATACCATGCTGAACAAAATGGTTTGCAGGATGCTAAGAAAGGTGTTCTGTTCATCGATTTTCCTCCAGTTTTGCAGCTTCAGCTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTAAAGATTAATGATCGTTATGAGTTTCCATTGCAACTTGATCTTGATCGAGACAATCGAAAATATTTATCACCTGATGCTGATAGGAACGTTCGCAATCTTTACACACTTCATAGTGTTCTGGTTCACAGTGGTGGTGTGCACGGTGGACATTACTATGCTTTTATCAGACCCACTCTCTCTGATCAGTGGTACAAATTCGATGACGAGAGGGTGACAAAAGAAGACCCTAAACGGGCATTAGAGGAGCAATATGGTGGTGAGGAAGAGTTACCACAGACAAATCCTGGATTCAATAACAGTCCTTTTAAATTCACCAAATATTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAGGAAAAAGTTGTATGCAATGTGGACGAGAAAGACATTGCTGAGCATTTAAGGGAGAGGTTGAAAAAAGAACAGGAAGAAAAAGAGCACAAAAAGAAAGAAAAGGCTGAGGCTCACCTTTACACTATCATAAAGGTGGCACGAGATGAAGACCTCGGAGAACAGATTGGAAAGGATATATATTTTGATCTTGTAGACCATGACAAAGTGCGGAGTTTCCGTGTCCAAAAGCAGACACCATTTAACGTTTTCAAGGAAGAGGTTGCTAAAGAGTTTGGCATACCTGTCCAATTCCAGCGCTTTTGGCTATGGGCAAAGCGTCAAAACCATACATATCGTCCTAATCGTCCATTCACACACATTGAGGAAGCACAATCTGTTGGACAATTGAGGGAAATATCGAACAAGGTTCACAATGCAGAATTAAAATTGTTTTTGGAAGTGGAACATGGGCCGGATTTATGTCCCATTGCACCACCTGAGAAGACAAAGGATGATATATTGCTTTTTTTCAAGTTATATGATCCTGAAAAAGAGGAACTGCGTTATGTTGGCAGACTCTTTGTGAATAGTACTGGCAAGCCATCAGAAATCTTAACAAGGTTAAATAAAATGGCTGGTTATGATCCTGATGAAGAGATTGGACTTTATGAGGAAATTAAGTTTGAACCAAATGTAATGTGTGAGCCTATTGACCAGAAATTAACATTTCGAGCAAGCCAGCTTGAAGATGGAGATATTATATGCTTTCAGAAAGTTATTGCTATAGATAATGAGGAACATATCCGCTATCCTGACGTGCCTTCTTACTTAGAATATGTGCATAATCGCCAGGTTGTTCACTTTCGGTCTCTAGATAAACCAAAGGATGATGACTTCTCCCTGGAGATGTCAAGACTTTTTACATATGATGACGTTGTGGAGAGAGTAGCAGAACAACTTAGTTTGAATGACCCATCTAAAATCAGGCTCACCCCACACAACTGCTACTCTCAACAACCTAAACCCCAGCCTATCAAGTACCGAGGGGTGGACCATTTATCTGATATGCTGGTTCACTACAATCAGACATCGGATATATTGTACTATGAAGTACTTGACATCCCTCTGCCAGAATTACAAGGTCTGAAAACTCTGAAAGTTGCATTTCATCAAGCTACCTTGGATGAAGTCGTTATACATACCATCAGACTCCCAAAGCAGAGCACTGTGGGAGATGTCCTTGATGATCTTAAAACAAAGGTTGAATTGTCTCGTCCTGATGCTGAGCTTAGGTTGCTTGAAGTCTTCTATCACAAAATATACAAGGTTTTCCCTCCCAATGAAAAGATTGAAAACATAAACGATCAATACTGGACACTACGAGCAGAGGAGATTCCAGAAGAAGAGAAAAATCTTGGTCCTCTTGATCGTCTAATCCATGTGTATCATTTTACTAAAGACACAACTCAGAACCAAATGCAAATTCAAAACTTTGGGGAACCCTTCTTCTTGGTCATACACGAATGTGAGACTTTGGCCGAAATTAGAGTGCGAATACAGAAGAAGCTTCAAGTTCCTGATGATGAGTTTGTCAAGTGGAAGTTTGCCTTTTTTTCATTAGGGCGACCAGAGTACCTCGAGGACTCTGACGTTGTATCAAGTCGCTTTCAGAGAAGAGACGTATATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACTGATAATGCTCCTAAAAGATCATATGCTGCTAACCAGAGTCGTCACACGTATGAGAAGCCAGTAAAGATTTATAATTAG 3372 0.406 MTVMTPAPIDQQQQQEDEEMLVPHTVPHADLAENNHEPMDVVAQPEIANPVEPAEDPTPTRFAWKIDNFSRMNTKKLYSDVFVVGSFKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGWSRYAQFSLTVANQIHTKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLMNDTLLIEAEVIVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFLQHDVQELNRVLCEKLEDKMKATVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNKYHAEQNGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDNRKYLSPDADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNSPFKFTKYSNAYMLVYIREADKEKVVCNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLGEQIGKDIYFDLVDHDKVRSFRVQKQTPFNVFKEEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPFTHIEEAQSVGQLREISNKVHNAELKLFLEVEHGPDLCPIAPPEKTKDDILLFFKLYDPEKEELRYVGRLFVNSTGKPSEILTRLNKMAGYDPDEEIGLYEEIKFEPNVMCEPIDQKLTFRASQLEDGDIICFQKVIAIDNEEHIRYPDVPSYLEYVHNRQVVHFRSLDKPKDDDFSLEMSRLFTYDDVVERVAEQLSLNDPSKIRLTPHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHQATLDEVVIHTIRLPKQSTVGDVLDDLKTKVELSRPDAELRLLEVFYHKIYKVFPPNEKIENINDQYWTLRAEEIPEEEKNLGPLDRLIHVYHFTKDTTQNQMQIQNFGEPFFLVIHECETLAEIRVRIQKKLQVPDDEFVKWKFAFFSLGRPEYLEDSDVVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAANQSRHTYEKPVKIYN 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02672 1123 FunFam Ubiquitin carboxyl-terminal hydrolase 13 201 529 - -
Vifa1g02672 1123 Pfam MATH domain 66 184 IPR002083 GO:0005515
Vifa1g02672 1123 Pfam Ubiquitin-specific protease C-terminal 891 1101 IPR029346 -
Vifa1g02672 1123 MobiDBLite consensus disorder prediction 485 507 - -
Vifa1g02672 1123 SUPERFAMILY TRAF domain-like 57 189 - -
Vifa1g02672 1123 CDD MATH 61 184 IPR002083 GO:0005515
Vifa1g02672 1123 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 629 881 IPR024729 -
Vifa1g02672 1123 ProSiteProfiles MATH/TRAF domain profile. 59 184 IPR002083 GO:0005515
Vifa1g02672 1123 FunFam Ubiquitin carboxyl-terminal hydrolase 13 689 806 - -
Vifa1g02672 1123 SUPERFAMILY Cysteine proteinases 199 556 IPR038765 -
Vifa1g02672 1123 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 204 528 IPR028889 -
Vifa1g02672 1123 CDD peptidase_C19C 202 528 - -
Vifa1g02672 1123 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 444 461 IPR018200 GO:0004843|GO:0006511
Vifa1g02672 1123 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 205 220 IPR018200 GO:0004843|GO:0006511
Vifa1g02672 1123 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 58 200 IPR008974 GO:0005515
Vifa1g02672 1123 Gene3D - 807 904 - -
Vifa1g02672 1123 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 67 530 - -
Vifa1g02672 1123 FunFam Ubiquitin carboxyl-terminal hydrolase 13 807 904 - -
Vifa1g02672 1123 Gene3D - 689 806 - -
Vifa1g02672 1123 Pfam Ubiquitin carboxyl-terminal hydrolase 204 525 IPR001394 GO:0004843|GO:0016579
Vifa1g02672 1123 Coils Coil 537 568 - -
Vifa1g02672 1123 SMART math_3 61 165 IPR002083 GO:0005515
Vifa1g02672 1123 Gene3D Cysteine proteinases 201 529 - -
Vifa1g02672 1123 FunFam Ubiquitin carboxyl-terminal hydrolase 13 57 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02672 Vifa-Chr1 419819596 419843461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02672 311 483 Miscellaneous Gene Families AT2G24640 26.966 9.31e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02672 K11838 - gmx:100800328 2080.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02671 1 419819596 419843461 Vifa1g02672 1 419819596 419843461 PCT