Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01979 ATGAAATCATTACTCAAAACCAAACCTTTTACCAAATTAATTCCACTCTCATCTTCATTCTGTGCAATTACTCTCTTCATGTTTATTTCCATACTATTCTTTACAACATCAAAAATAGTAAGACTAAACATATCTAGTTCTTCAACACAAGCTGCCGAATCTGATCCAACCGATGTTAATCATCTTGTCTTTGGAATTGCTTCAACTAGAAATTCATGGCCTAAAAGGAAAGAATATGTCAAACTTTGGTGGAACAAAAAAATTAAGGGTTGTGTTTTTGTGGATAATCTTCCTGCTCAAGAAAATGGCACTGATGATTATGTTCCTCCTCTTTGTGTCTCTGAAGACACTTCAAAGTTTCATTACACTTATAAACGTGGTTTAAGATCAGCAATTCGCGTGGCGCGTGTTGTGAAAGAGATTGTTGAATTAAAGAATCATTCAAATGTTAGGTGGTATGTGTTTGGTGATGATGACACTATTTTCTTTCCTGAGAATCTTGCTAAGACTCTTTCTAAATATGATCATAGGCTTTGGTACTATGTTGGTGCTTACTCCGAGAATTATGAAGGGTCTTATGCTTTTGGTTTTGGAATGGCTTTTGGTGGAGGCGGTTTCGCAATAAGTGCTTCTTTAGCAAATGTTTTATCTAGAGTTTTTGATTCTTGTATTGAAAGATACTCTCATCTTTATGGAAGTGATGCTAGGGTGTTCTCTTGCATAGCTGAACTCGGTGTTGGATTAACATATGAACCTGGTTTTCATCAGGTTGATTTAAGCGGAAATATTTTTGGACTATTGGCTGCACATCCATTAAGTCTCATGTTATCCTTACATCATCTTGATCTCGTCGAACCAATCTTTCCTCAAATGACAGTTTCAAAATCAGTGCAACATTTATTTGAAGCTGCAAATATTGATTCACACAGGATCCTACAACAAACAGTTTGTTACGATAAACATTTTTCGCGGACGATTTCACTATCATGGGGCTATGCTGTTGAAATATTCCAAAACAATGAACTTTTACCAGATATTCTTAGAGTTCAAGAAACATTCAAACCATGGAAGAAAAAATTGCCTTTTGCTGGAATATATACATTTAGTACAACAAAAACTCATCCGGATCCTTGTGAAAGACCTGCAATTTTCTATCTAAACAATGTATCTTCTGATAAAGATGGTATCATTAGCAACTATACGAAATCTTTTCGAGATTGTTCCAATGATAAGATATCATTGAAGAATTTGGAGGTGGTTAAAGTCGTCACAAATAAGTTAGAACTGGACACCAAACAGTTGGAGAGTCCTAGAAGGCAGTGTTGTGATGTGTTGCAGTCTAATTCTGATCAAGTAATGGAAATTGCAATAAGAAAATGCAAATATGAAGAATTGATTTATATGCATTGA 1410 0.3496 MKSLLKTKPFTKLIPLSSSFCAITLFMFISILFFTTSKIVRLNISSSSTQAAESDPTDVNHLVFGIASTRNSWPKRKEYVKLWWNKKIKGCVFVDNLPAQENGTDDYVPPLCVSEDTSKFHYTYKRGLRSAIRVARVVKEIVELKNHSNVRWYVFGDDDTIFFPENLAKTLSKYDHRLWYYVGAYSENYEGSYAFGFGMAFGGGGFAISASLANVLSRVFDSCIERYSHLYGSDARVFSCIAELGVGLTYEPGFHQVDLSGNIFGLLAAHPLSLMLSLHHLDLVEPIFPQMTVSKSVQHLFEAANIDSHRILQQTVCYDKHFSRTISLSWGYAVEIFQNNELLPDILRVQETFKPWKKKLPFAGIYTFSTTKTHPDPCERPAIFYLNNVSSDKDGIISNYTKSFRDCSNDKISLKNLEVVKVVTNKLELDTKQLESPRRQCCDVLQSNSDQVMEIAIRKCKYEELIYMH 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01979 469 Gene3D - 49 287 - -
Vifa1g01979 469 PANTHER FRINGE-RELATED 20 466 - -
Vifa1g01979 469 FunFam Fringe-related protein-like 49 305 - -
Vifa1g01979 469 Pfam Protein of unknown function, DUF604 194 442 IPR006740 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01979 Vifa-Chr1 317617134 317618716 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01979 23 434 Glycosyltransferase AT1G05280 50.691 9.43e-153 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01979 - - gmx:100779943 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01979 1 317617134 317618716 Vifa1g01979 1 317617134 317618716 ECH
Vifa1g01979 1 317617134 317618716 Vifa6g00232 6 100195689 100198131 PCT
Vifa6g00233 6 100664861 100668496 Vifa1g01979 1 317617134 317618716 PCT